Variant report

Variant	rs4981285
Chromosome Location	chr14:35811699-35811700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:35760612..35764048-chr14:35809630..35812978,4	MCF-7	breast:
2	chr1:235242161..235244380-chr14:35810854..35813654,2	MCF-7	breast:
3	chr14:35757408..35763930-chr14:35809319..35813404,11	MCF-7	breast:
4	chr14:35783009..35785578-chr14:35809337..35811839,2	MCF-7	breast:
5	chr14:35765428..35767078-chr14:35809489..35811845,2	MCF-7	breast:
6	chr14:35589885..35593973-chr14:35809162..35812137,5	MCF-7	breast:
7	chr14:35515127..35516753-chr14:35810234..35812265,2	MCF-7	breast:
8	chr14:35681682..35685352-chr14:35808762..35812906,3	MCF-7	breast:
9	chr14:35772058..35774272-chr14:35810527..35812254,2	MCF-7	breast:
10	chr14:35698922..35700571-chr14:35810245..35812248,2	MCF-7	breast:
11	chr14:35790365..35792681-chr14:35809651..35811760,2	MCF-7	breast:
12	chr14:35810790..35811847-chr14:35873610..35874301,3	MCF-7	breast:
13	chr14:35804902..35807934-chr14:35810651..35813744,3	K562	blood:
14	chr14:35774042..35776362-chr14:35810358..35812429,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NFKBIA-4	chr14:35811376-35812101	l_964_chr14:35808028-35812101_thyroid

No data

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction
ENSG00000100902	Chromatin interaction
ENSG00000151327	Chromatin interaction
ENSG00000258790	Chromatin interaction
ENSG00000100890	Chromatin interaction
ENSG00000092020	Chromatin interaction
ENSG00000265530	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10083375	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10083387	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10132397	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10135277	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10135435	0.82[EUR][1000 genomes]
rs10136627	0.84[EUR][1000 genomes]
rs10140133	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10140922	0.87[EUR][1000 genomes]
rs10146008	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10146017	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10148567	0.87[EUR][1000 genomes]
rs10162508	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10438062	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12385925	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12435379	0.82[EUR][1000 genomes]
rs12436216	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1885151	0.91[ASN][1000 genomes]
rs2006074	0.99[ASN][1000 genomes]
rs2006075	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28589517	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28627414	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2899835	0.99[ASN][1000 genomes]
rs4981283	0.98[ASN][1000 genomes]
rs4981288	0.88[EUR][1000 genomes]
rs4982255	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4982258	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4982259	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4982260	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4982261	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4982262	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4982265	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4982267	0.88[EUR][1000 genomes]
rs4982268	0.87[EUR][1000 genomes]
rs55746125	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57645874	0.84[EUR][1000 genomes]
rs57856432	0.80[EUR][1000 genomes]
rs58519555	0.87[EUR][1000 genomes]
rs72666622	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72666634	0.87[EUR][1000 genomes]
rs762010	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8003074	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322947	0.93[ASN][1000 genomes]
rs9322950	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv518090	chr14:35802483-35840241	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	esv3336602	chr14:35811677-35812030	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35800000-35815000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr14:35800600-35814400	Enhancers	Placenta	Placenta
3	chr14:35800800-35812200	Enhancers	Fetal Thymus	thymus
4	chr14:35800800-35813800	Enhancers	Lung	lung
5	chr14:35805800-35821000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:35806200-35812400	Enhancers	Ovary	ovary
7	chr14:35806800-35816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:35806800-35816600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:35807400-35816600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:35808000-35813800	Enhancers	Spleen	Spleen
11	chr14:35808200-35814400	Enhancers	Primary hematopoietic stem cells	blood
12	chr14:35808400-35812000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:35808400-35812200	Enhancers	Fetal Intestine Large	intestine
14	chr14:35808400-35812200	Enhancers	Fetal Stomach	stomach
15	chr14:35808600-35811800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr14:35808600-35812000	Enhancers	Primary T cells from cord blood	blood
17	chr14:35808800-35812000	Enhancers	Small Intestine	intestine
18	chr14:35808800-35812200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr14:35808800-35812200	Enhancers	Pancreas	Pancrea
20	chr14:35809000-35813200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:35809000-35813800	Enhancers	Fetal Muscle Leg	muscle
22	chr14:35809400-35811800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:35809400-35814400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr14:35809800-35812000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr14:35810000-35812000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:35810000-35812200	Enhancers	Fetal Heart	heart
27	chr14:35810000-35812200	Enhancers	NHLF	lung
28	chr14:35810000-35812400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr14:35810200-35811800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr14:35810200-35811800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:35810200-35811800	Flanking Active TSS	A549	lung
32	chr14:35810200-35812000	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr14:35810200-35812000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:35810200-35812000	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr14:35810200-35812000	Flanking Active TSS	Hela-S3	cervix
36	chr14:35810200-35812000	Enhancers	HMEC	breast
37	chr14:35810200-35812200	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr14:35810200-35813600	Enhancers	Fetal Intestine Small	intestine
39	chr14:35810400-35811800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:35810400-35811800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:35810400-35811800	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr14:35810400-35811800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
43	chr14:35810400-35811800	Flanking Active TSS	Colonic Mucosa	Colon
44	chr14:35810400-35811800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr14:35810400-35811800	Enhancers	NH-A	brain
46	chr14:35810400-35812000	Enhancers	Thymus	Thymus
47	chr14:35810400-35812200	Flanking Bivalent TSS/Enh	HepG2	liver
48	chr14:35810600-35811800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:35810600-35811800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:35810600-35812000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links