Variant report

Variant	rs1885151
Chromosome Location	chr14:35816139-35816140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35808792..35810743-chr14:35815553..35817945,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10083375	0.88[ASN][1000 genomes]
rs10083387	0.88[ASN][1000 genomes]
rs10132397	0.88[ASN][1000 genomes]
rs10135277	0.88[ASN][1000 genomes]
rs10140133	0.86[ASN][1000 genomes]
rs10146008	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10146017	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10162508	0.89[ASN][1000 genomes]
rs12436216	0.90[ASN][1000 genomes]
rs2006074	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2006075	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28589517	0.88[ASN][1000 genomes]
rs2899835	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4981283	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4981285	0.91[ASN][1000 genomes]
rs4982258	0.88[ASN][1000 genomes]
rs4982259	0.88[ASN][1000 genomes]
rs4982260	0.88[ASN][1000 genomes]
rs4982261	0.88[ASN][1000 genomes]
rs4982262	0.88[ASN][1000 genomes]
rs55746125	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72666622	0.87[ASN][1000 genomes]
rs762010	0.97[ASN][1000 genomes]
rs8003074	0.88[ASN][1000 genomes]
rs9322947	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322950	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv518090	chr14:35802483-35840241	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1885151	PPP2R3C	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35805800-35821000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:35806800-35816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:35806800-35816600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:35807400-35816600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:35811000-35816200	Weak transcription	K562	blood
6	chr14:35811200-35816200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:35811200-35816400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:35811400-35816400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:35811600-35816600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:35811600-35816600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:35811600-35816600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:35811600-35816600	Weak transcription	Brain Germinal Matrix	brain
13	chr14:35811600-35816800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:35811800-35816200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:35811800-35816200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:35811800-35816200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:35811800-35821400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:35812000-35816400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:35812000-35816600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:35812000-35816600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:35812000-35816800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:35812200-35816200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:35812200-35816200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:35812200-35818800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr14:35812200-35821000	Weak transcription	Fetal Heart	heart
26	chr14:35812600-35817200	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr14:35813200-35816800	Weak transcription	Brain Angular Gyrus	brain
28	chr14:35813400-35816600	Weak transcription	Fetal Lung	lung
29	chr14:35813400-35816800	Weak transcription	Esophagus	oesophagus
30	chr14:35813400-35820800	Weak transcription	Fetal Kidney	kidney
31	chr14:35813600-35816200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:35813600-35816200	Weak transcription	Fetal Intestine Small	intestine
33	chr14:35813600-35816200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr14:35813600-35816200	Weak transcription	Ovary	ovary
35	chr14:35813600-35816600	Weak transcription	Brain Hippocampus Middle	brain
36	chr14:35813600-35816600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr14:35813600-35816600	Weak transcription	Gastric	stomach
38	chr14:35813600-35816800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:35813600-35820800	Weak transcription	Right Atrium	heart
40	chr14:35813800-35816200	Weak transcription	Adipose Nuclei	Adipose
41	chr14:35813800-35816600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:35813800-35816600	Weak transcription	Brain Substantia Nigra	brain
43	chr14:35813800-35816600	Weak transcription	Lung	lung
44	chr14:35813800-35816600	Weak transcription	Thymus	Thymus
45	chr14:35813800-35816600	Weak transcription	Spleen	Spleen
46	chr14:35813800-35816800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr14:35814000-35816600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr14:35814000-35816600	Weak transcription	Stomach Mucosa	stomach
49	chr14:35814000-35817000	Weak transcription	Primary B cells from cord blood	blood
50	chr14:35814200-35816200	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links