Variant report

Variant	rs12432632
Chromosome Location	chr14:72709804-72709805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10131012	0.82[ASN][1000 genomes]
rs10134489	0.80[ASN][1000 genomes]
rs10134542	0.82[ASN][1000 genomes]
rs10143449	0.81[ASN][1000 genomes]
rs10149098	0.82[ASN][1000 genomes]
rs10150159	0.82[ASN][1000 genomes]
rs10150242	0.81[ASN][1000 genomes]
rs1076317	0.85[ASN][1000 genomes]
rs12148024	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12432346	0.94[ASN][1000 genomes]
rs12894979	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1402056	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1520326	0.86[ASN][1000 genomes]
rs1544487	0.95[ASN][1000 genomes]
rs1558071	0.82[ASN][1000 genomes]
rs1558073	0.81[ASN][1000 genomes]
rs17180251	0.82[ASN][1000 genomes]
rs2079502	0.85[ASN][1000 genomes]
rs2108466	0.85[ASN][1000 genomes]
rs2238212	0.81[ASN][1000 genomes]
rs2238213	0.82[ASN][1000 genomes]
rs2238215	0.85[ASN][1000 genomes]
rs2238216	0.85[ASN][1000 genomes]
rs2238217	0.80[ASN][1000 genomes]
rs2238218	0.82[ASN][1000 genomes]
rs2239257	0.80[ASN][1000 genomes]
rs2239261	0.82[ASN][1000 genomes]
rs2332807	0.92[ASN][1000 genomes]
rs2332808	0.82[ASN][1000 genomes]
rs3784049	0.86[ASN][1000 genomes]
rs4903003	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4903004	0.82[ASN][1000 genomes]
rs6574055	0.90[ASN][1000 genomes]
rs6574056	0.94[ASN][1000 genomes]
rs6574057	0.80[ASN][1000 genomes]
rs7350728	0.82[ASN][1000 genomes]
rs740337	0.82[ASN][1000 genomes]
rs8007922	0.82[ASN][1000 genomes]
rs847241	0.82[ASN][1000 genomes]
rs847304	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72699800-72719600	Weak transcription	Right Ventricle	heart
2	chr14:72706600-72710000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72706600-72721200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:72706800-72712600	Weak transcription	Fetal Kidney	kidney
5	chr14:72707000-72710200	Weak transcription	Fetal Stomach	stomach
6	chr14:72709000-72711200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:72709600-72710000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:72709800-72710000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr14:72709800-72710800	Enhancers	Cortex derived primary cultured neurospheres	brain

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