Variant report

Variant	rs2238215
Chromosome Location	chr14:72730038-72730039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10131012	0.96[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs10134489	0.80[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10134542	0.80[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs10143449	0.93[ASN][1000 genomes]
rs10149098	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs10150159	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10150242	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1076317	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11849202	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12148024	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12432346	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12432632	0.85[ASN][1000 genomes]
rs12894979	0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1402056	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1520326	0.80[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs1544487	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs1558071	0.94[ASN][1000 genomes]
rs1558073	0.82[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs1568404	0.85[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1589302	0.80[EUR][1000 genomes]
rs17180251	0.94[ASN][1000 genomes]
rs17180265	0.90[ASN][1000 genomes]
rs2079502	0.80[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2108466	0.80[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2238212	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2238213	0.80[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2238216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238217	0.80[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2238218	0.80[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2238243	0.81[JPT][hapmap]
rs2238244	0.81[JPT][hapmap]
rs2239257	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2239258	0.96[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs2239261	0.80[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2332807	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2332808	0.80[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs3784049	0.96[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs4903003	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4903004	0.96[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs6574055	0.91[JPT][hapmap]
rs6574056	0.83[ASN][1000 genomes]
rs6574057	0.96[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs699369	0.91[ASN][1000 genomes]
rs7144302	0.89[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs71448391	0.91[ASN][1000 genomes]
rs7350728	0.82[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs740337	0.82[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs758004	0.91[ASN][1000 genomes]
rs763507	0.81[JPT][hapmap]
rs8007922	0.82[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs847241	0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs847345	0.96[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72723000-72731600	Weak transcription	Left Ventricle	heart
2	chr14:72723400-72747600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72730000-72730200	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links