Variant report

Variant	rs12432682
Chromosome Location	chr14:36583264-36583265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10220323	0.99[ASN][1000 genomes]
rs11156905	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11623102	0.95[ASN][1000 genomes]
rs12890957	0.93[ASN][1000 genomes]
rs12896537	0.93[ASN][1000 genomes]
rs1333312	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1333313	0.90[ASN][1000 genomes]
rs1742867	0.96[CEU][hapmap];0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs1742868	0.92[CEU][hapmap]
rs1742869	0.92[CEU][hapmap]
rs1952710	0.95[ASN][1000 genomes]
rs1953119	0.90[ASN][1000 genomes]
rs1957313	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs1957314	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs2780312	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs2780313	0.81[CEU][hapmap]
rs2780314	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs368181	0.92[CEU][hapmap]
rs371191	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs394246	0.92[CEU][hapmap]
rs395212	0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs395660	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs398467	0.84[ASN][1000 genomes]
rs398745	0.92[CEU][hapmap]
rs408558	0.80[ASN][1000 genomes]
rs408783	0.81[ASN][1000 genomes]
rs410546	0.82[ASN][1000 genomes]
rs429041	0.92[CEU][hapmap]
rs437723	0.81[ASN][1000 genomes]
rs448145	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs6571735	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7145211	0.88[CEU][hapmap]
rs7145546	0.88[CEU][hapmap]
rs7147401	0.92[CEU][hapmap]
rs8003253	0.85[EUR][1000 genomes]
rs8007617	0.85[EUR][1000 genomes]
rs8007774	0.86[ASN][1000 genomes]
rs8008989	0.85[EUR][1000 genomes]
rs8020453	0.88[EUR][1000 genomes]
rs847514	0.81[ASN][1000 genomes]
rs847515	0.80[ASN][1000 genomes]
rs860200	0.88[CEU][hapmap]
rs944290	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051045	chr14:36116503-36764947	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv542038	chr14:36116503-36764947	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1041441	chr14:36545463-36756347	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv542041	chr14:36545463-36756347	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12432682	C14orf126	cis	parietal	SCAN
rs12432682	RP11-116N8.4	cis	Thyroid	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36582800-36583600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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