Variant report
Variant | rs8003253 |
---|---|
Chromosome Location | chr14:36557691-36557692 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11156905 | 0.93[EUR][1000 genomes] |
rs12432682 | 0.85[EUR][1000 genomes] |
rs1333312 | 0.95[EUR][1000 genomes] |
rs1742867 | 0.93[CEU][hapmap];0.84[EUR][1000 genomes] |
rs1742868 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1742869 | 0.96[CEU][hapmap] |
rs1742876 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1953120 | 0.81[EUR][1000 genomes] |
rs1957313 | 0.82[CEU][hapmap];0.83[EUR][1000 genomes] |
rs1957314 | 0.82[CEU][hapmap];0.83[EUR][1000 genomes] |
rs2780312 | 0.82[CEU][hapmap];0.83[EUR][1000 genomes] |
rs2780313 | 0.84[CEU][hapmap] |
rs2780314 | 0.88[CEU][hapmap];0.81[EUR][1000 genomes] |
rs34232378 | 0.81[EUR][1000 genomes] |
rs367883 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs368181 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs368772 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs371191 | 0.92[EUR][1000 genomes] |
rs375095 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs394246 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
rs395212 | 0.92[CEU][hapmap];0.83[EUR][1000 genomes] |
rs395660 | 0.92[EUR][1000 genomes] |
rs396043 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs398745 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs408783 | 0.83[EUR][1000 genomes] |
rs410546 | 0.84[EUR][1000 genomes] |
rs414155 | 0.81[EUR][1000 genomes] |
rs416664 | 0.85[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs429041 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs448145 | 0.93[CEU][hapmap];0.84[EUR][1000 genomes] |
rs4981320 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6571735 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7145211 | 0.92[CEU][hapmap] |
rs7145546 | 0.93[CEU][hapmap] |
rs7147401 | 0.96[CEU][hapmap] |
rs8007617 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs8008989 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs8020453 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs847514 | 0.80[EUR][1000 genomes] |
rs847516 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs860200 | 0.85[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1051045 | chr14:36116503-36764947 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
2 | nsv542038 | chr14:36116503-36764947 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
3 | nsv1051147 | chr14:36413342-36562863 | Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv1040256 | chr14:36501452-37172046 | Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 45 gene(s) | inside rSNPs | diseases |
5 | nsv542040 | chr14:36501452-37172046 | Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 45 gene(s) | inside rSNPs | diseases |
6 | nsv1041441 | chr14:36545463-36756347 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
7 | nsv542041 | chr14:36545463-36756347 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:36555800-36558000 | Enhancers | NHDF-Ad | bronchial |
2 | chr14:36556600-36557800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
3 | chr14:36557600-36558200 | Weak transcription | A549 | lung |