Variant report

Variant	rs12434452
Chromosome Location	chr14:32302429-32302430
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10132896	0.83[ASN][1000 genomes]
rs11156707	0.82[EUR][1000 genomes]
rs11156709	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11624178	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11626466	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11626492	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11628570	0.84[AMR][1000 genomes]
rs12431452	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12431637	0.81[EUR][1000 genomes]
rs12432377	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12433471	0.80[ASN][1000 genomes]
rs12433494	0.80[ASN][1000 genomes]
rs12434666	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12436193	0.80[ASN][1000 genomes]
rs12437440	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12878501	0.84[AMR][1000 genomes]
rs12878817	0.83[ASN][1000 genomes]
rs12878829	0.84[AMR][1000 genomes]
rs12880119	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12880173	0.84[AMR][1000 genomes]
rs12882060	0.84[AMR][1000 genomes]
rs12886280	0.83[ASN][1000 genomes]
rs12887004	0.84[ASN][1000 genomes]
rs1430428	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1430431	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17098152	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17379143	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17463975	0.82[ASN][1000 genomes]
rs2082167	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2105275	0.83[ASN][1000 genomes]
rs2115956	0.81[ASN][1000 genomes]
rs2151782	0.96[ASN][1000 genomes]
rs2378945	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28788900	0.83[ASN][1000 genomes]
rs34394545	0.81[AMR][1000 genomes]
rs34876895	0.80[EUR][1000 genomes]
rs35018996	0.84[AMR][1000 genomes]
rs35588979	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35650602	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35722809	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35746551	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35875023	0.83[ASN][1000 genomes]
rs35943743	0.80[AFR][1000 genomes]
rs36095275	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4514587	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4548772	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4600374	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4981126	0.80[ASN][1000 genomes]
rs4981911	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4981912	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4981915	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4981916	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56001625	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60006676	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61421033	0.83[ASN][1000 genomes]
rs61996360	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6571468	0.84[ASN][1000 genomes]
rs67355575	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67399055	0.84[AMR][1000 genomes]
rs68170651	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7142429	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7144386	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7145749	0.83[ASN][1000 genomes]
rs7145823	0.82[ASN][1000 genomes]
rs7153475	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7493492	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8018532	0.84[ASN][1000 genomes]
rs8018901	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv901593	chr14:32282564-32350371	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:32281800-32330200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:32291000-32310400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:32293200-32303600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:32294200-32328800	Weak transcription	Ovary	ovary
6	chr14:32294600-32304200	Weak transcription	HSMM	muscle
7	chr14:32294800-32328000	Weak transcription	Left Ventricle	heart
8	chr14:32295000-32332800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:32297000-32304000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:32297000-32306600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr14:32297200-32303800	Weak transcription	HepG2	liver
12	chr14:32297400-32325800	Weak transcription	Primary B cells from cord blood	blood
13	chr14:32298200-32322000	Weak transcription	Primary T cells from cord blood	blood
14	chr14:32298400-32303800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:32298400-32304200	Weak transcription	Fetal Kidney	kidney
16	chr14:32299000-32303000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:32299000-32303800	Weak transcription	Osteobl	bone
18	chr14:32299000-32325800	Weak transcription	Fetal Stomach	stomach
19	chr14:32299200-32303800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:32299400-32303800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr14:32301400-32303800	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links