Variant report

Variant	rs12878817
Chromosome Location	chr14:32290089-32290090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10132896	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10134906	0.80[ASN][1000 genomes]
rs10135589	0.80[ASN][1000 genomes]
rs11156702	0.80[ASN][1000 genomes]
rs11156707	0.80[ASN][1000 genomes]
rs11156709	0.83[ASN][1000 genomes]
rs11156710	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11624178	0.83[ASN][1000 genomes]
rs11626894	0.84[ASN][1000 genomes]
rs11847399	0.81[ASN][1000 genomes]
rs12431452	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12432377	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12433471	0.89[ASN][1000 genomes]
rs12433494	0.89[ASN][1000 genomes]
rs12434452	0.83[ASN][1000 genomes]
rs12434666	0.96[ASN][1000 genomes]
rs12435286	0.81[ASN][1000 genomes]
rs12436193	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12436891	0.84[ASN][1000 genomes]
rs12437440	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12586434	0.92[ASN][1000 genomes]
rs12590375	0.83[ASN][1000 genomes]
rs12880119	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12881465	0.80[ASN][1000 genomes]
rs12882812	0.82[ASN][1000 genomes]
rs12886280	0.97[ASN][1000 genomes]
rs12887004	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12894301	0.80[ASN][1000 genomes]
rs1430425	0.83[ASN][1000 genomes]
rs1430431	0.87[ASN][1000 genomes]
rs17098061	0.81[ASN][1000 genomes]
rs17379143	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17463975	0.96[ASN][1000 genomes]
rs1897141	0.81[ASN][1000 genomes]
rs1897142	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2082167	0.96[ASN][1000 genomes]
rs2105275	0.98[ASN][1000 genomes]
rs2115956	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2151782	0.85[ASN][1000 genomes]
rs2378940	0.80[ASN][1000 genomes]
rs2378945	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28788900	0.98[ASN][1000 genomes]
rs34876895	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35132574	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35138073	0.80[ASN][1000 genomes]
rs35317729	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35349298	0.80[ASN][1000 genomes]
rs35588979	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35650602	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35722809	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35746551	0.96[ASN][1000 genomes]
rs35875023	0.97[ASN][1000 genomes]
rs36020968	0.92[ASN][1000 genomes]
rs36095275	0.85[ASN][1000 genomes]
rs4514587	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4981111	0.82[ASN][1000 genomes]
rs4981120	0.80[ASN][1000 genomes]
rs4981124	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4981126	0.89[ASN][1000 genomes]
rs4981127	0.94[ASN][1000 genomes]
rs4981880	0.81[ASN][1000 genomes]
rs4981897	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4981905	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4981909	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4981910	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4981911	0.87[ASN][1000 genomes]
rs4981912	0.87[ASN][1000 genomes]
rs4981915	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4981916	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4993622	0.80[ASN][1000 genomes]
rs56001625	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56293516	0.81[ASN][1000 genomes]
rs60006676	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61421033	0.98[ASN][1000 genomes]
rs61994433	0.88[ASN][1000 genomes]
rs61994434	0.88[ASN][1000 genomes]
rs61996360	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6571468	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67355575	0.81[ASN][1000 genomes]
rs67753865	0.80[ASN][1000 genomes]
rs68170651	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7141411	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7141900	0.91[ASN][1000 genomes]
rs7142429	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7144386	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7145749	0.91[ASN][1000 genomes]
rs7145823	0.96[ASN][1000 genomes]
rs7148166	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7151228	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154830	0.80[ASN][1000 genomes]
rs7156445	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7156902	0.85[ASN][1000 genomes]
rs7158021	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7159758	0.83[ASN][1000 genomes]
rs7492643	0.80[ASN][1000 genomes]
rs8010603	0.83[ASN][1000 genomes]
rs8016912	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8018532	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8018901	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8021851	0.80[ASN][1000 genomes]
rs891468	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322877	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9743875	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv901593	chr14:32282564-32350371	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:32280000-32292200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:32281800-32330200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr14:32282600-32298000	Weak transcription	Fetal Stomach	stomach
5	chr14:32285600-32290600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:32288400-32298200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:32288800-32295800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:32289200-32298200	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links