Variant report

Variant	rs12586434
Chromosome Location	chr14:32271771-32271772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 253 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:247)

rs_ID	r²[population]
rs10083308	0.81[ASN][1000 genomes]
rs10129541	0.81[ASN][1000 genomes]
rs10132896	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10134906	0.84[ASN][1000 genomes]
rs10135589	0.82[ASN][1000 genomes]
rs10141659	0.81[ASN][1000 genomes]
rs11156702	0.84[ASN][1000 genomes]
rs11156703	0.81[ASN][1000 genomes]
rs11156704	0.81[ASN][1000 genomes]
rs11156707	0.83[ASN][1000 genomes]
rs11156709	0.89[ASN][1000 genomes]
rs11156710	0.97[ASN][1000 genomes]
rs11620846	0.81[ASN][1000 genomes]
rs11621147	0.82[ASN][1000 genomes]
rs11621253	0.80[ASN][1000 genomes]
rs11621384	0.81[ASN][1000 genomes]
rs11621446	0.81[ASN][1000 genomes]
rs11624178	0.89[ASN][1000 genomes]
rs11624772	0.80[ASN][1000 genomes]
rs11626466	0.81[ASN][1000 genomes]
rs11626492	0.81[ASN][1000 genomes]
rs11626894	0.87[ASN][1000 genomes]
rs11628555	0.81[ASN][1000 genomes]
rs11628570	0.81[ASN][1000 genomes]
rs11847399	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11851745	0.82[ASN][1000 genomes]
rs12147459	0.81[ASN][1000 genomes]
rs12147945	0.81[ASN][1000 genomes]
rs12431452	0.93[ASN][1000 genomes]
rs12431637	0.81[ASN][1000 genomes]
rs12431783	0.81[ASN][1000 genomes]
rs12432120	0.81[ASN][1000 genomes]
rs12432377	0.93[ASN][1000 genomes]
rs12433471	0.97[ASN][1000 genomes]
rs12433494	0.97[ASN][1000 genomes]
rs12433808	0.80[ASN][1000 genomes]
rs12434666	0.90[ASN][1000 genomes]
rs12435286	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12435348	0.81[ASN][1000 genomes]
rs12436187	0.81[ASN][1000 genomes]
rs12436193	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12436518	0.82[ASN][1000 genomes]
rs12436891	0.87[ASN][1000 genomes]
rs12436940	0.81[ASN][1000 genomes]
rs12437440	0.92[ASN][1000 genomes]
rs12588396	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12589034	0.80[AMR][1000 genomes]
rs12589227	0.83[ASN][1000 genomes]
rs12590215	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12590375	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12590381	0.85[ASN][1000 genomes]
rs12590836	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12878022	0.82[ASN][1000 genomes]
rs12878072	0.82[ASN][1000 genomes]
rs12878501	0.80[ASN][1000 genomes]
rs12878817	0.92[ASN][1000 genomes]
rs12878829	0.81[ASN][1000 genomes]
rs12880119	0.94[ASN][1000 genomes]
rs12880173	0.80[ASN][1000 genomes]
rs12881355	0.81[ASN][1000 genomes]
rs12881465	0.82[ASN][1000 genomes]
rs12882060	0.81[ASN][1000 genomes]
rs12882812	0.83[ASN][1000 genomes]
rs12886260	0.81[ASN][1000 genomes]
rs12886280	0.93[ASN][1000 genomes]
rs12886367	0.81[ASN][1000 genomes]
rs12886765	0.81[ASN][1000 genomes]
rs12887004	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12887952	0.80[ASN][1000 genomes]
rs12892973	0.82[ASN][1000 genomes]
rs12894301	0.84[ASN][1000 genomes]
rs12895480	0.80[ASN][1000 genomes]
rs12896685	0.81[ASN][1000 genomes]
rs1367315	0.81[ASN][1000 genomes]
rs1430425	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1430428	0.83[ASN][1000 genomes]
rs1430431	0.94[ASN][1000 genomes]
rs1470285	0.80[ASN][1000 genomes]
rs1560426	0.80[ASN][1000 genomes]
rs17098061	0.83[ASN][1000 genomes]
rs17098129	0.81[ASN][1000 genomes]
rs17098152	0.81[ASN][1000 genomes]
rs17379143	0.93[ASN][1000 genomes]
rs17463975	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17483942	0.86[ASN][1000 genomes]
rs1822355	0.83[ASN][1000 genomes]
rs1897141	0.83[ASN][1000 genomes]
rs1897142	0.91[ASN][1000 genomes]
rs2082167	0.90[ASN][1000 genomes]
rs2105275	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2115950	0.83[ASN][1000 genomes]
rs2115951	0.82[ASN][1000 genomes]
rs2115956	0.89[ASN][1000 genomes]
rs2151782	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2153560	0.81[ASN][1000 genomes]
rs2211251	0.80[ASN][1000 genomes]
rs2378940	0.84[ASN][1000 genomes]
rs2378942	0.81[ASN][1000 genomes]
rs2378943	0.81[ASN][1000 genomes]
rs2378944	0.81[ASN][1000 genomes]
rs28788900	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34170106	0.81[ASN][1000 genomes]
rs34327830	0.80[ASN][1000 genomes]
rs34394545	0.81[ASN][1000 genomes]
rs34464469	0.80[ASN][1000 genomes]
rs34505839	0.80[ASN][1000 genomes]
rs34793909	0.81[ASN][1000 genomes]
rs34827813	0.80[ASN][1000 genomes]
rs34859886	0.80[ASN][1000 genomes]
rs34876895	0.87[ASN][1000 genomes]
rs34950447	0.80[ASN][1000 genomes]
rs34977423	0.80[ASN][1000 genomes]
rs35018996	0.81[ASN][1000 genomes]
rs35132574	0.81[ASN][1000 genomes]
rs35138073	0.81[ASN][1000 genomes]
rs35144494	0.85[ASN][1000 genomes]
rs35272921	0.81[ASN][1000 genomes]
rs35317729	0.84[ASN][1000 genomes]
rs35349298	0.84[ASN][1000 genomes]
rs35396606	0.81[ASN][1000 genomes]
rs35427690	0.80[ASN][1000 genomes]
rs35588979	0.92[ASN][1000 genomes]
rs35647158	0.81[ASN][1000 genomes]
rs35650602	0.94[ASN][1000 genomes]
rs35655077	0.81[ASN][1000 genomes]
rs35722809	0.93[ASN][1000 genomes]
rs35731734	0.81[ASN][1000 genomes]
rs35746551	0.90[ASN][1000 genomes]
rs35765178	0.81[ASN][1000 genomes]
rs35827419	0.80[ASN][1000 genomes]
rs35875023	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35942871	0.84[ASN][1000 genomes]
rs36020968	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36095275	0.92[ASN][1000 genomes]
rs36161359	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4011635	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4514587	0.94[ASN][1000 genomes]
rs4548772	0.81[ASN][1000 genomes]
rs4600374	0.81[ASN][1000 genomes]
rs4619303	0.81[ASN][1000 genomes]
rs4981111	0.83[ASN][1000 genomes]
rs4981112	0.82[ASN][1000 genomes]
rs4981114	0.80[ASN][1000 genomes]
rs4981116	0.82[ASN][1000 genomes]
rs4981117	0.81[ASN][1000 genomes]
rs4981119	0.81[ASN][1000 genomes]
rs4981120	0.84[ASN][1000 genomes]
rs4981121	0.81[ASN][1000 genomes]
rs4981122	0.81[ASN][1000 genomes]
rs4981123	0.85[ASN][1000 genomes]
rs4981124	0.91[ASN][1000 genomes]
rs4981126	0.97[ASN][1000 genomes]
rs4981127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4981880	0.82[ASN][1000 genomes]
rs4981881	0.82[ASN][1000 genomes]
rs4981885	0.81[ASN][1000 genomes]
rs4981887	0.81[ASN][1000 genomes]
rs4981891	0.81[ASN][1000 genomes]
rs4981894	0.81[ASN][1000 genomes]
rs4981895	0.81[ASN][1000 genomes]
rs4981897	0.84[ASN][1000 genomes]
rs4981898	0.81[ASN][1000 genomes]
rs4981899	0.81[ASN][1000 genomes]
rs4981900	0.81[ASN][1000 genomes]
rs4981904	0.81[ASN][1000 genomes]
rs4981905	0.84[ASN][1000 genomes]
rs4981906	0.81[ASN][1000 genomes]
rs4981908	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4981909	0.86[ASN][1000 genomes]
rs4981910	0.91[ASN][1000 genomes]
rs4981911	0.94[ASN][1000 genomes]
rs4981912	0.94[ASN][1000 genomes]
rs4981915	0.92[ASN][1000 genomes]
rs4981916	0.92[ASN][1000 genomes]
rs4993622	0.84[ASN][1000 genomes]
rs55650244	0.81[ASN][1000 genomes]
rs55701649	0.81[ASN][1000 genomes]
rs55966138	0.81[ASN][1000 genomes]
rs56001625	0.92[ASN][1000 genomes]
rs56091700	0.81[ASN][1000 genomes]
rs56293516	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58337705	0.80[ASN][1000 genomes]
rs60006676	0.93[ASN][1000 genomes]
rs61421033	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61994433	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61994434	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61996360	0.93[ASN][1000 genomes]
rs6571459	0.81[ASN][1000 genomes]
rs6571468	0.93[ASN][1000 genomes]
rs66472756	0.82[ASN][1000 genomes]
rs67355575	0.83[ASN][1000 genomes]
rs67399055	0.81[ASN][1000 genomes]
rs67753865	0.83[ASN][1000 genomes]
rs68170651	0.93[ASN][1000 genomes]
rs7141411	0.98[ASN][1000 genomes]
rs7141900	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7142429	0.93[ASN][1000 genomes]
rs7144386	0.93[ASN][1000 genomes]
rs7145749	0.94[ASN][1000 genomes]
rs7145823	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7148166	0.84[ASN][1000 genomes]
rs7149151	0.81[ASN][1000 genomes]
rs7149452	0.81[ASN][1000 genomes]
rs7150402	0.81[ASN][1000 genomes]
rs7151228	0.94[ASN][1000 genomes]
rs7153475	0.81[ASN][1000 genomes]
rs7154830	0.82[ASN][1000 genomes]
rs7156445	0.82[ASN][1000 genomes]
rs7156670	0.80[ASN][1000 genomes]
rs7156902	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7156969	0.80[ASN][1000 genomes]
rs7157366	0.80[ASN][1000 genomes]
rs7158021	0.84[ASN][1000 genomes]
rs7158027	0.80[ASN][1000 genomes]
rs7159758	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs720954	0.81[ASN][1000 genomes]
rs72674891	0.81[ASN][1000 genomes]
rs7492643	0.84[ASN][1000 genomes]
rs7493492	0.81[ASN][1000 genomes]
rs7493577	0.81[ASN][1000 genomes]
rs7494358	0.81[ASN][1000 genomes]
rs767333	0.81[ASN][1000 genomes]
rs8007984	0.81[ASN][1000 genomes]
rs8010580	0.82[ASN][1000 genomes]
rs8010603	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8011663	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8013530	0.80[ASN][1000 genomes]
rs8014386	0.82[ASN][1000 genomes]
rs8016912	0.84[ASN][1000 genomes]
rs8018186	0.81[ASN][1000 genomes]
rs8018532	0.93[ASN][1000 genomes]
rs8018901	0.93[ASN][1000 genomes]
rs8019075	0.80[ASN][1000 genomes]
rs8019296	0.81[ASN][1000 genomes]
rs8019333	0.81[ASN][1000 genomes]
rs8019820	0.81[ASN][1000 genomes]
rs8020055	0.81[ASN][1000 genomes]
rs8020338	0.81[ASN][1000 genomes]
rs8020397	0.81[ASN][1000 genomes]
rs8020980	0.81[ASN][1000 genomes]
rs8021092	0.81[ASN][1000 genomes]
rs8021851	0.82[ASN][1000 genomes]
rs8022541	0.81[ASN][1000 genomes]
rs891468	0.88[ASN][1000 genomes]
rs919521	0.81[ASN][1000 genomes]
rs9322877	0.88[ASN][1000 genomes]
rs9743875	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv976828	chr14:32257091-32272180	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv85392	chr14:32269881-32275120	Enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:32251200-32272600	Weak transcription	Primary T cells from cord blood	blood
3	chr14:32257600-32272200	Weak transcription	Pancreas	Pancrea
4	chr14:32257600-32281200	Weak transcription	HepG2	liver
5	chr14:32263000-32287400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:32266800-32281000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr14:32270600-32281000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:32271000-32271800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:32271200-32273000	Weak transcription	Primary hematopoietic stem cells	blood

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