Variant report

Variant	rs12436518
Chromosome Location	chr14:32251987-32251988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32250042..32252755-chr14:32254053..32255704,2	MCF-7	breast:

Extended variants
information (count: 255 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:247)

rs_ID	r²[population]
rs10083308	0.86[ASN][1000 genomes]
rs10129541	0.87[ASN][1000 genomes]
rs10134906	0.87[ASN][1000 genomes]
rs10135589	0.86[ASN][1000 genomes]
rs10141659	0.87[ASN][1000 genomes]
rs11156698	0.83[ASN][1000 genomes]
rs11156701	0.84[ASN][1000 genomes]
rs11156702	0.87[ASN][1000 genomes]
rs11156703	0.87[ASN][1000 genomes]
rs11156704	0.86[ASN][1000 genomes]
rs11156707	0.88[ASN][1000 genomes]
rs11156709	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11156710	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11620846	0.87[ASN][1000 genomes]
rs11621147	0.86[ASN][1000 genomes]
rs11621253	0.85[ASN][1000 genomes]
rs11621384	0.87[ASN][1000 genomes]
rs11621446	0.87[ASN][1000 genomes]
rs11623835	0.81[ASN][1000 genomes]
rs11624178	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11624772	0.85[ASN][1000 genomes]
rs11626466	0.87[ASN][1000 genomes]
rs11626492	0.87[ASN][1000 genomes]
rs11626894	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11628555	0.81[ASN][1000 genomes]
rs11628570	0.87[ASN][1000 genomes]
rs11847399	0.93[ASN][1000 genomes]
rs11851745	0.86[ASN][1000 genomes]
rs12147459	0.86[ASN][1000 genomes]
rs12147841	0.83[ASN][1000 genomes]
rs12147945	0.86[ASN][1000 genomes]
rs12431452	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12431637	0.87[ASN][1000 genomes]
rs12431783	0.87[ASN][1000 genomes]
rs12432120	0.87[ASN][1000 genomes]
rs12432377	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12433471	0.82[ASN][1000 genomes]
rs12433494	0.82[ASN][1000 genomes]
rs12433808	0.85[ASN][1000 genomes]
rs12435286	0.90[ASN][1000 genomes]
rs12435348	0.87[ASN][1000 genomes]
rs12435681	0.83[ASN][1000 genomes]
rs12436187	0.87[ASN][1000 genomes]
rs12436727	0.83[ASN][1000 genomes]
rs12436876	0.82[ASN][1000 genomes]
rs12436891	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12436940	0.87[ASN][1000 genomes]
rs12437440	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12586434	0.82[ASN][1000 genomes]
rs12588396	0.86[ASN][1000 genomes]
rs12589227	0.86[ASN][1000 genomes]
rs12590215	0.85[ASN][1000 genomes]
rs12590375	0.88[ASN][1000 genomes]
rs12590381	0.86[ASN][1000 genomes]
rs12590836	0.88[ASN][1000 genomes]
rs12878022	0.85[ASN][1000 genomes]
rs12878072	0.85[ASN][1000 genomes]
rs12878323	0.87[ASN][1000 genomes]
rs12878501	0.85[ASN][1000 genomes]
rs12878829	0.87[ASN][1000 genomes]
rs12880119	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12880173	0.85[ASN][1000 genomes]
rs12881178	0.80[ASN][1000 genomes]
rs12881355	0.87[ASN][1000 genomes]
rs12881465	0.86[ASN][1000 genomes]
rs12882060	0.87[ASN][1000 genomes]
rs12882812	0.82[ASN][1000 genomes]
rs12886260	0.87[ASN][1000 genomes]
rs12886367	0.87[ASN][1000 genomes]
rs12886765	0.86[ASN][1000 genomes]
rs12887952	0.85[ASN][1000 genomes]
rs12890318	0.85[ASN][1000 genomes]
rs12892973	0.85[ASN][1000 genomes]
rs12894301	0.87[ASN][1000 genomes]
rs12895480	0.85[ASN][1000 genomes]
rs12895565	0.85[ASN][1000 genomes]
rs12896685	0.87[ASN][1000 genomes]
rs12897570	0.87[ASN][1000 genomes]
rs1367315	0.87[ASN][1000 genomes]
rs1430425	0.88[ASN][1000 genomes]
rs1430428	0.88[ASN][1000 genomes]
rs1430431	0.83[ASN][1000 genomes]
rs1443143	0.80[ASN][1000 genomes]
rs1443144	0.80[ASN][1000 genomes]
rs1470285	0.85[ASN][1000 genomes]
rs1560426	0.85[ASN][1000 genomes]
rs17098061	0.83[ASN][1000 genomes]
rs17098129	0.87[ASN][1000 genomes]
rs17098152	0.87[ASN][1000 genomes]
rs17379143	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17483942	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1822355	0.86[ASN][1000 genomes]
rs1897141	0.89[ASN][1000 genomes]
rs1897142	0.88[ASN][1000 genomes]
rs2115950	0.87[ASN][1000 genomes]
rs2115951	0.88[ASN][1000 genomes]
rs2153560	0.81[ASN][1000 genomes]
rs2185522	0.85[ASN][1000 genomes]
rs2211251	0.85[ASN][1000 genomes]
rs2226057	0.85[ASN][1000 genomes]
rs2378940	0.87[ASN][1000 genomes]
rs2378942	0.87[ASN][1000 genomes]
rs2378943	0.87[ASN][1000 genomes]
rs2378944	0.87[ASN][1000 genomes]
rs2378945	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2890037	0.80[ASN][1000 genomes]
rs34170106	0.87[ASN][1000 genomes]
rs34327830	0.83[ASN][1000 genomes]
rs34394545	0.87[ASN][1000 genomes]
rs34464469	0.80[ASN][1000 genomes]
rs34582137	0.83[ASN][1000 genomes]
rs34782106	0.80[ASN][1000 genomes]
rs34793909	0.87[ASN][1000 genomes]
rs34859886	0.85[ASN][1000 genomes]
rs34876895	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34950447	0.80[ASN][1000 genomes]
rs34977423	0.80[ASN][1000 genomes]
rs35018996	0.87[ASN][1000 genomes]
rs35138073	0.81[ASN][1000 genomes]
rs35144494	0.86[ASN][1000 genomes]
rs35157202	0.85[ASN][1000 genomes]
rs35272921	0.87[ASN][1000 genomes]
rs35317729	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35349298	0.87[ASN][1000 genomes]
rs35396606	0.87[ASN][1000 genomes]
rs35427690	0.85[ASN][1000 genomes]
rs35588979	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35647158	0.86[ASN][1000 genomes]
rs35650602	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35655077	0.87[ASN][1000 genomes]
rs35722809	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35731734	0.87[ASN][1000 genomes]
rs35765178	0.87[ASN][1000 genomes]
rs35827419	0.85[ASN][1000 genomes]
rs35942871	0.85[ASN][1000 genomes]
rs36020968	0.82[ASN][1000 genomes]
rs36095275	0.81[ASN][1000 genomes]
rs36161359	0.86[ASN][1000 genomes]
rs4011635	0.86[ASN][1000 genomes]
rs4514587	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4548772	0.87[ASN][1000 genomes]
rs4600374	0.87[ASN][1000 genomes]
rs4619303	0.87[ASN][1000 genomes]
rs4981111	0.82[ASN][1000 genomes]
rs4981112	0.84[ASN][1000 genomes]
rs4981113	0.84[ASN][1000 genomes]
rs4981114	0.85[ASN][1000 genomes]
rs4981116	0.86[ASN][1000 genomes]
rs4981117	0.87[ASN][1000 genomes]
rs4981119	0.87[ASN][1000 genomes]
rs4981120	0.87[ASN][1000 genomes]
rs4981121	0.87[ASN][1000 genomes]
rs4981122	0.87[ASN][1000 genomes]
rs4981123	0.86[ASN][1000 genomes]
rs4981124	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4981126	0.82[ASN][1000 genomes]
rs4981127	0.80[ASN][1000 genomes]
rs4981880	0.81[ASN][1000 genomes]
rs4981881	0.84[ASN][1000 genomes]
rs4981885	0.86[ASN][1000 genomes]
rs4981887	0.87[ASN][1000 genomes]
rs4981891	0.87[ASN][1000 genomes]
rs4981894	0.87[ASN][1000 genomes]
rs4981895	0.87[ASN][1000 genomes]
rs4981897	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4981898	0.87[ASN][1000 genomes]
rs4981899	0.87[ASN][1000 genomes]
rs4981900	0.87[ASN][1000 genomes]
rs4981904	0.87[ASN][1000 genomes]
rs4981905	0.87[ASN][1000 genomes]
rs4981906	0.87[ASN][1000 genomes]
rs4981908	0.85[ASN][1000 genomes]
rs4981909	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4981910	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4981911	0.84[ASN][1000 genomes]
rs4981912	0.84[ASN][1000 genomes]
rs4981915	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4981916	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4993622	0.87[ASN][1000 genomes]
rs55650244	0.87[ASN][1000 genomes]
rs55701649	0.81[ASN][1000 genomes]
rs55966138	0.81[ASN][1000 genomes]
rs56001625	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56091700	0.87[ASN][1000 genomes]
rs57001370	0.85[ASN][1000 genomes]
rs58337705	0.85[ASN][1000 genomes]
rs60006676	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61994433	0.81[ASN][1000 genomes]
rs61994434	0.81[ASN][1000 genomes]
rs61996360	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61997404	0.83[ASN][1000 genomes]
rs6571459	0.87[ASN][1000 genomes]
rs66472756	0.86[ASN][1000 genomes]
rs67355575	0.89[ASN][1000 genomes]
rs67399055	0.87[ASN][1000 genomes]
rs67753865	0.81[ASN][1000 genomes]
rs68170651	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7141411	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7141900	0.83[ASN][1000 genomes]
rs7142429	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7144386	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7148166	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7149151	0.86[ASN][1000 genomes]
rs7149452	0.86[ASN][1000 genomes]
rs7150402	0.87[ASN][1000 genomes]
rs7151228	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7153475	0.87[ASN][1000 genomes]
rs7154830	0.84[ASN][1000 genomes]
rs7156445	0.81[EUR][1000 genomes]
rs7156670	0.85[ASN][1000 genomes]
rs7156969	0.85[ASN][1000 genomes]
rs7157366	0.85[ASN][1000 genomes]
rs7158021	0.87[ASN][1000 genomes]
rs7158027	0.85[ASN][1000 genomes]
rs7159758	0.90[ASN][1000 genomes]
rs720954	0.87[ASN][1000 genomes]
rs72674891	0.87[ASN][1000 genomes]
rs7492643	0.87[ASN][1000 genomes]
rs7493492	0.87[ASN][1000 genomes]
rs7493577	0.87[ASN][1000 genomes]
rs7494358	0.87[ASN][1000 genomes]
rs767333	0.87[ASN][1000 genomes]
rs8007984	0.87[ASN][1000 genomes]
rs8010580	0.86[ASN][1000 genomes]
rs8010603	0.88[ASN][1000 genomes]
rs8011663	0.86[ASN][1000 genomes]
rs8013530	0.80[ASN][1000 genomes]
rs8014386	0.84[ASN][1000 genomes]
rs8016912	0.87[ASN][1000 genomes]
rs8018186	0.87[ASN][1000 genomes]
rs8018901	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8019296	0.86[ASN][1000 genomes]
rs8019333	0.87[ASN][1000 genomes]
rs8019820	0.87[ASN][1000 genomes]
rs8020055	0.87[ASN][1000 genomes]
rs8020338	0.86[ASN][1000 genomes]
rs8020397	0.87[ASN][1000 genomes]
rs8020980	0.85[ASN][1000 genomes]
rs8021092	0.87[ASN][1000 genomes]
rs8021851	0.86[ASN][1000 genomes]
rs8022541	0.87[ASN][1000 genomes]
rs891468	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs919521	0.87[ASN][1000 genomes]
rs9322877	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9671460	0.82[ASN][1000 genomes]
rs9743875	0.84[ASN][1000 genomes]
rs9796396	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv524652	chr14:32241873-32267323	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv521631	chr14:32242747-32267323	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32222600-32270200	Weak transcription	Aorta	Aorta
2	chr14:32239600-32259800	Weak transcription	Left Ventricle	heart
3	chr14:32244400-32270200	Weak transcription	Ovary	ovary
4	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:32250800-32270200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr14:32251200-32272600	Weak transcription	Primary T cells from cord blood	blood
7	chr14:32251400-32261400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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