The 2.0 version of rSNPBase

Variant report

Variant rs12887952
Chromosome Location chr14:32172814-32172815
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr14:32141400-32175800 Weak transcription Primary T helper cells fromperipheralblood blood
2 chr14:32148000-32183600 Weak transcription Stomach Smooth Muscle stomach
3 chr14:32152400-32173000 Weak transcription Ovary ovary
4 chr14:32155400-32173000 Weak transcription Aorta Aorta
5 chr14:32159000-32184800 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr14:32162000-32175000 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr14:32162000-32186800 Weak transcription Brain Hippocampus Middle brain
8 chr14:32165000-32179600 Weak transcription Brain Inferior Temporal Lobe brain
9 chr14:32165600-32188200 Weak transcription Right Ventricle heart
10 chr14:32165800-32175000 Weak transcription Gastric stomach
11 chr14:32166400-32177800 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr14:32166600-32176200 Weak transcription Liver Liver
13 chr14:32167200-32177000 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr14:32167800-32174400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr14:32168800-32174400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr14:32168800-32176800 Weak transcription Left Ventricle heart
17 chr14:32169600-32177200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr14:32169600-32181800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr14:32169800-32173800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr14:32170400-32175400 Weak transcription Fetal Lung lung
21 chr14:32170800-32173600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr14:32171000-32186400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr14:32171000-32200600 Weak transcription Placenta Amnion Placenta Amnion
24 chr14:32171400-32175200 Strong transcription Primary T cells from cord blood blood
25 chr14:32171600-32173400 Strong transcription Primary B cells from cord blood blood
26 chr14:32171600-32173400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
27 chr14:32171600-32174000 Weak transcription HepG2 liver
28 chr14:32171600-32174800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr14:32171600-32176400 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr14:32171800-32173800 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr14:32171800-32175000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr14:32171800-32176000 Weak transcription Primary T cells fromperipheralblood blood
33 chr14:32171800-32176800 Weak transcription A549 lung
34 chr14:32171800-32182200 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr14:32172000-32174600 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr14:32172000-32186400 Weak transcription Pancreas Pancrea
37 chr14:32172000-32188200 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr14:32172200-32173800 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr14:32172200-32174800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr14:32172200-32180000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr14:32172400-32173000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
42 chr14:32172400-32173400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr14:32172400-32174800 Strong transcription Fetal Stomach stomach
44 chr14:32172400-32175200 Strong transcription Adipose Nuclei Adipose
45 chr14:32172400-32175400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr14:32172400-32175400 ZNF genes & repeats Dnd41 blood
47 chr14:32172400-32175600 ZNF genes & repeats Fetal Intestine Small intestine
48 chr14:32172600-32173200 Weak transcription Fetal Muscle Leg muscle
49 chr14:32172600-32173400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr14:32172600-32173400 ZNF genes & repeats Esophagus oesophagus

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Last update: Aug 31, 2015