Variant report

Variant	rs10437986
Chromosome Location	chr14:32027462-32027463
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr14:32027404-32027532	HepG2	liver:	n/a	chr14:32027429-32027439
2	MAFK	chr14:32027403-32027463	HepG2	liver:	n/a	chr14:32027429-32027439

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32025880..32027814-chr14:32029222..32031344,2	MCF-7	breast:
2	chr14:32026102..32028468-chr14:32029065..32030751,2	K562	blood:

Variant related genes	Relation type
NUBPL	TF binding region
ENSG00000151413	Chromatin interaction
ENSG00000257155	Chromatin interaction

Extended variants
information (count: 234 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:228)

rs_ID	r²[population]
rs10129541	0.85[CHB][hapmap]
rs10135539	0.90[ASN][1000 genomes]
rs10135589	0.89[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap]
rs10139871	0.81[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs10141659	0.86[CHB][hapmap]
rs10143899	0.95[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs10144137	0.91[ASN][1000 genomes]
rs10146080	0.85[ASN][1000 genomes]
rs11156690	0.88[ASN][1000 genomes]
rs11156691	0.84[CHB][hapmap];0.90[ASN][1000 genomes]
rs11156692	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs11156693	0.87[ASN][1000 genomes]
rs11156694	0.85[ASN][1000 genomes]
rs11156695	0.84[ASN][1000 genomes]
rs11156701	0.84[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11156703	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11156704	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs11620949	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs11621036	0.85[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs11621147	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11621253	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs11621446	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11622262	0.90[ASN][1000 genomes]
rs11624772	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs11625161	0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs11625312	0.86[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs11626320	0.88[ASN][1000 genomes]
rs11627332	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs11628555	0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs11628570	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11628819	0.83[CHB][hapmap];0.85[ASN][1000 genomes]
rs12147945	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12184972	0.87[ASN][1000 genomes]
rs12432746	0.83[CEU][hapmap];0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs12433808	0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs12434789	0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs12435348	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs12437209	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs12587670	0.89[ASN][1000 genomes]
rs12589170	0.86[ASN][1000 genomes]
rs12589227	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12878022	0.81[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap]
rs12881020	0.85[ASN][1000 genomes]
rs12881178	0.84[ASN][1000 genomes]
rs12881327	0.82[ASN][1000 genomes]
rs12882018	0.86[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs12882812	0.82[CEU][hapmap];0.80[ASN][1000 genomes]
rs12885598	0.85[ASN][1000 genomes]
rs12886052	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs12886260	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12886367	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12887952	0.80[ASN][1000 genomes]
rs12888673	0.83[ASN][1000 genomes]
rs12890184	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs12890288	0.85[ASN][1000 genomes]
rs12890318	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs12894811	0.85[ASN][1000 genomes]
rs12895305	0.87[ASN][1000 genomes]
rs12895480	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs12895565	0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs12896685	0.85[CHB][hapmap]
rs1348352	0.87[ASN][1000 genomes]
rs1373012	0.80[ASN][1000 genomes]
rs1443143	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs1443144	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs1470285	0.80[ASN][1000 genomes]
rs1545275	0.86[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs1545276	0.87[ASN][1000 genomes]
rs1548057	0.88[ASN][1000 genomes]
rs1560426	0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs17098014	0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs17098028	0.85[ASN][1000 genomes]
rs17098029	0.85[ASN][1000 genomes]
rs17098061	0.86[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs17390315	0.88[ASN][1000 genomes]
rs17390625	0.85[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs17390827	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs17481352	0.88[ASN][1000 genomes]
rs1816815	0.87[ASN][1000 genomes]
rs1822355	0.88[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap]
rs1947004	0.91[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs1954440	0.85[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs1954441	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1972925	0.95[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs2120140	0.88[CEU][hapmap];0.80[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2120141	0.84[ASN][1000 genomes]
rs2120142	0.89[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2153560	0.86[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs2165814	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2211251	0.80[ASN][1000 genomes]
rs2226057	0.86[CHB][hapmap]
rs2378896	0.81[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs2378897	0.85[CHB][hapmap];0.90[ASN][1000 genomes]
rs2378936	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2378940	0.89[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap]
rs2378944	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs2890037	0.84[ASN][1000 genomes]
rs34042472	0.90[ASN][1000 genomes]
rs34319089	0.85[ASN][1000 genomes]
rs34464469	0.87[ASN][1000 genomes]
rs34505839	0.85[ASN][1000 genomes]
rs34747628	0.85[ASN][1000 genomes]
rs34782106	0.88[ASN][1000 genomes]
rs34827813	0.85[ASN][1000 genomes]
rs34859886	0.80[ASN][1000 genomes]
rs34872357	0.89[ASN][1000 genomes]
rs34950447	0.83[ASN][1000 genomes]
rs34971643	0.86[ASN][1000 genomes]
rs34977423	0.87[ASN][1000 genomes]
rs34984098	0.88[ASN][1000 genomes]
rs35117360	0.90[ASN][1000 genomes]
rs35138073	0.82[ASN][1000 genomes]
rs35316258	0.90[ASN][1000 genomes]
rs35334661	0.84[ASN][1000 genomes]
rs35427690	0.80[ASN][1000 genomes]
rs35620331	0.81[ASN][1000 genomes]
rs35632753	0.86[ASN][1000 genomes]
rs35827419	0.80[ASN][1000 genomes]
rs35896456	0.88[ASN][1000 genomes]
rs36024565	0.85[ASN][1000 genomes]
rs36092827	0.85[ASN][1000 genomes]
rs36168543	0.85[ASN][1000 genomes]
rs3759779	0.90[ASN][1000 genomes]
rs3861472	0.87[ASN][1000 genomes]
rs4143987	0.86[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs4143988	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs4497586	0.81[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs4619303	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs4981105	0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs4981106	0.86[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs4981109	0.85[ASN][1000 genomes]
rs4981111	0.89[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs4981112	0.81[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap]
rs4981114	0.80[ASN][1000 genomes]
rs4981119	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4981120	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs4981122	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4981123	0.85[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4981857	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs4981858	0.91[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs4981860	0.90[ASN][1000 genomes]
rs4981863	0.83[ASN][1000 genomes]
rs4981864	0.83[ASN][1000 genomes]
rs4981865	0.85[ASN][1000 genomes]
rs4981866	0.85[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs4981868	0.85[ASN][1000 genomes]
rs4981869	0.80[ASN][1000 genomes]
rs4981871	0.88[CEU][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs4981874	0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs4981876	0.86[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs4981877	0.85[ASN][1000 genomes]
rs4981880	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs4981891	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4981894	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4981897	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs4981900	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4981902	0.88[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap]
rs4981904	0.82[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs55701649	0.81[ASN][1000 genomes]
rs55814060	0.83[ASN][1000 genomes]
rs55966138	0.81[ASN][1000 genomes]
rs58110472	0.90[ASN][1000 genomes]
rs59781248	0.87[ASN][1000 genomes]
rs60782727	0.89[ASN][1000 genomes]
rs6571434	0.81[ASN][1000 genomes]
rs6571435	0.88[ASN][1000 genomes]
rs6571437	0.87[ASN][1000 genomes]
rs6571438	0.86[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs6571448	0.82[ASN][1000 genomes]
rs6571459	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs66665255	0.88[ASN][1000 genomes]
rs66753375	0.87[ASN][1000 genomes]
rs67468105	0.90[ASN][1000 genomes]
rs67753865	0.82[ASN][1000 genomes]
rs71417966	0.81[ASN][1000 genomes]
rs71417969	0.83[ASN][1000 genomes]
rs7142098	0.90[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs7142801	0.82[ASN][1000 genomes]
rs7142881	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7143323	0.82[ASN][1000 genomes]
rs7143829	0.87[ASN][1000 genomes]
rs7144102	0.86[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7147510	0.85[ASN][1000 genomes]
rs7149572	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs7152067	0.90[ASN][1000 genomes]
rs7152244	0.81[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7152506	0.90[ASN][1000 genomes]
rs7154174	0.85[CHB][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs7154830	0.82[ASN][1000 genomes]
rs7155549	0.92[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7156670	0.80[ASN][1000 genomes]
rs7156969	0.80[ASN][1000 genomes]
rs7157366	0.81[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs7158027	0.80[ASN][1000 genomes]
rs720954	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7492643	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap]
rs767333	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs8003788	0.88[ASN][1000 genomes]
rs8005303	0.87[ASN][1000 genomes]
rs8006164	0.89[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs8009126	0.90[ASN][1000 genomes]
rs8009531	0.91[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs8009547	0.84[ASN][1000 genomes]
rs8009557	0.89[ASN][1000 genomes]
rs8009647	0.91[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs8010049	0.91[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs8010500	0.88[ASN][1000 genomes]
rs8010580	0.83[CHB][hapmap]
rs8013530	0.89[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs8013916	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs8015282	0.86[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs8015944	0.83[ASN][1000 genomes]
rs8016490	0.85[ASN][1000 genomes]
rs8016832	0.88[ASN][1000 genomes]
rs8016912	0.85[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap]
rs8018042	0.90[ASN][1000 genomes]
rs8019075	0.82[ASN][1000 genomes]
rs8019296	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs8020397	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs8020748	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8022163	0.86[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs8022541	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs8022828	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs919521	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs920729	0.81[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs9635155	0.80[CHB][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes]
rs9635156	0.82[ASN][1000 genomes]
rs9972191	0.95[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32024000-32030000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:32025000-32029800	Weak transcription	Fetal Heart	heart
3	chr14:32025800-32029800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:32026200-32030000	Weak transcription	Placenta Amnion	Placenta Amnion

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