Variant report

Variant	rs9635156
Chromosome Location	chr14:32085914-32085915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 197 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:190)

rs_ID	r²[population]
rs10135539	0.89[ASN][1000 genomes]
rs10139871	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10143899	0.86[ASN][1000 genomes]
rs10144137	0.86[ASN][1000 genomes]
rs10146080	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10437986	0.82[ASN][1000 genomes]
rs11156690	0.89[ASN][1000 genomes]
rs11156691	0.90[ASN][1000 genomes]
rs11156692	0.90[ASN][1000 genomes]
rs11156693	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11156694	0.95[ASN][1000 genomes]
rs11156695	0.94[ASN][1000 genomes]
rs11620949	0.94[ASN][1000 genomes]
rs11621036	0.94[ASN][1000 genomes]
rs11622262	0.90[ASN][1000 genomes]
rs11625161	0.90[ASN][1000 genomes]
rs11625312	0.93[ASN][1000 genomes]
rs11626320	0.89[ASN][1000 genomes]
rs11627332	0.93[ASN][1000 genomes]
rs11628555	0.84[ASN][1000 genomes]
rs11628819	0.94[ASN][1000 genomes]
rs12184972	0.92[ASN][1000 genomes]
rs12432746	0.93[ASN][1000 genomes]
rs12434789	0.90[ASN][1000 genomes]
rs12435286	0.80[ASN][1000 genomes]
rs12437209	0.94[ASN][1000 genomes]
rs12587670	0.90[ASN][1000 genomes]
rs12589170	0.92[ASN][1000 genomes]
rs12589227	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12590381	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12590836	0.80[ASN][1000 genomes]
rs12878022	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12878072	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12881020	0.95[ASN][1000 genomes]
rs12881178	0.86[ASN][1000 genomes]
rs12881327	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12882018	0.93[ASN][1000 genomes]
rs12882812	0.84[ASN][1000 genomes]
rs12885598	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12886052	0.90[ASN][1000 genomes]
rs12887119	0.87[ASN][1000 genomes]
rs12888673	0.86[ASN][1000 genomes]
rs12890184	0.94[ASN][1000 genomes]
rs12890288	0.94[ASN][1000 genomes]
rs12892973	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12894811	0.94[ASN][1000 genomes]
rs12895305	0.92[ASN][1000 genomes]
rs1348352	0.92[ASN][1000 genomes]
rs1373012	0.82[ASN][1000 genomes]
rs1443143	0.92[ASN][1000 genomes]
rs1443144	0.92[ASN][1000 genomes]
rs1545275	0.92[ASN][1000 genomes]
rs1545276	0.92[ASN][1000 genomes]
rs1548057	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17098014	0.90[ASN][1000 genomes]
rs17098028	0.94[ASN][1000 genomes]
rs17098029	0.94[ASN][1000 genomes]
rs17098061	0.82[ASN][1000 genomes]
rs17390315	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17390625	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17390827	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17481352	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1816815	0.92[ASN][1000 genomes]
rs1822355	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1947004	0.88[ASN][1000 genomes]
rs1954440	0.92[ASN][1000 genomes]
rs1954441	0.91[ASN][1000 genomes]
rs1972925	0.86[ASN][1000 genomes]
rs2053569	0.87[ASN][1000 genomes]
rs2120140	0.96[ASN][1000 genomes]
rs2120141	0.96[ASN][1000 genomes]
rs2120142	0.96[ASN][1000 genomes]
rs2153560	0.83[ASN][1000 genomes]
rs2165814	0.94[ASN][1000 genomes]
rs2378896	0.90[ASN][1000 genomes]
rs2378897	0.90[ASN][1000 genomes]
rs2378936	0.88[ASN][1000 genomes]
rs2890037	0.86[ASN][1000 genomes]
rs34042472	0.90[ASN][1000 genomes]
rs34319089	0.90[ASN][1000 genomes]
rs34327830	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34464469	0.92[ASN][1000 genomes]
rs34505839	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34747628	0.90[ASN][1000 genomes]
rs34782106	0.92[ASN][1000 genomes]
rs34827813	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34872357	0.87[ASN][1000 genomes]
rs34950447	0.86[ASN][1000 genomes]
rs34971643	0.90[ASN][1000 genomes]
rs34977423	0.92[ASN][1000 genomes]
rs34984098	0.88[ASN][1000 genomes]
rs35117360	0.90[ASN][1000 genomes]
rs35138073	0.84[ASN][1000 genomes]
rs35144494	0.81[EUR][1000 genomes]
rs35316258	0.90[ASN][1000 genomes]
rs35334661	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35632753	0.94[ASN][1000 genomes]
rs35712231	0.81[EUR][1000 genomes]
rs35896456	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35942871	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36024565	0.95[ASN][1000 genomes]
rs36092827	0.95[ASN][1000 genomes]
rs36168543	0.95[ASN][1000 genomes]
rs3759779	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3861472	0.92[ASN][1000 genomes]
rs4143988	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4497586	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4981105	0.90[ASN][1000 genomes]
rs4981106	0.94[ASN][1000 genomes]
rs4981109	0.92[ASN][1000 genomes]
rs4981111	0.84[ASN][1000 genomes]
rs4981112	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4981113	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4981123	0.81[EUR][1000 genomes]
rs4981857	0.90[ASN][1000 genomes]
rs4981858	0.89[ASN][1000 genomes]
rs4981860	0.90[ASN][1000 genomes]
rs4981863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4981864	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4981865	0.94[ASN][1000 genomes]
rs4981866	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4981868	0.94[ASN][1000 genomes]
rs4981869	0.89[ASN][1000 genomes]
rs4981871	0.92[ASN][1000 genomes]
rs4981874	0.91[ASN][1000 genomes]
rs4981876	0.89[ASN][1000 genomes]
rs4981877	0.90[ASN][1000 genomes]
rs4981880	0.83[ASN][1000 genomes]
rs4981881	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4981909	0.80[ASN][1000 genomes]
rs55701649	0.84[ASN][1000 genomes]
rs55814060	0.88[ASN][1000 genomes]
rs55966138	0.84[ASN][1000 genomes]
rs58110472	0.90[ASN][1000 genomes]
rs59781248	0.90[ASN][1000 genomes]
rs60782727	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61995637	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61997404	0.82[EUR][1000 genomes]
rs6571435	0.86[ASN][1000 genomes]
rs6571437	0.93[ASN][1000 genomes]
rs6571438	0.92[ASN][1000 genomes]
rs6571448	0.87[ASN][1000 genomes]
rs66665255	0.88[ASN][1000 genomes]
rs66753375	0.91[ASN][1000 genomes]
rs67468105	0.90[ASN][1000 genomes]
rs67753865	0.82[ASN][1000 genomes]
rs71417966	0.91[ASN][1000 genomes]
rs71417969	0.92[ASN][1000 genomes]
rs7142098	0.88[ASN][1000 genomes]
rs7142149	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71427207	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7142801	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7142881	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7143323	0.90[ASN][1000 genomes]
rs7143829	0.92[ASN][1000 genomes]
rs7144102	0.96[ASN][1000 genomes]
rs7147510	0.90[ASN][1000 genomes]
rs7149572	0.89[ASN][1000 genomes]
rs7152067	0.86[ASN][1000 genomes]
rs7152244	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7152506	0.86[ASN][1000 genomes]
rs7154174	0.90[ASN][1000 genomes]
rs7154830	0.81[ASN][1000 genomes]
rs7155549	0.96[ASN][1000 genomes]
rs8003788	0.88[ASN][1000 genomes]
rs8005303	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8006164	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8009126	0.90[ASN][1000 genomes]
rs8009531	0.89[ASN][1000 genomes]
rs8009547	0.89[ASN][1000 genomes]
rs8009557	0.90[ASN][1000 genomes]
rs8009647	0.88[ASN][1000 genomes]
rs8010049	0.89[ASN][1000 genomes]
rs8010500	0.87[ASN][1000 genomes]
rs8013530	0.86[ASN][1000 genomes]
rs8013916	0.90[ASN][1000 genomes]
rs8014386	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8015282	0.90[ASN][1000 genomes]
rs8015944	0.85[ASN][1000 genomes]
rs8016490	0.95[ASN][1000 genomes]
rs8016832	0.89[ASN][1000 genomes]
rs8018042	0.90[ASN][1000 genomes]
rs8019075	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8020748	0.90[ASN][1000 genomes]
rs8022163	0.93[ASN][1000 genomes]
rs8022828	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs891468	0.81[ASN][1000 genomes]
rs920729	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9635155	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9972191	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	esv3363142	chr14:32083250-32120361	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32046200-32110600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:32052800-32089800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:32065800-32089800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:32065800-32089800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:32067600-32090400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:32069600-32092200	Weak transcription	Right Ventricle	heart
7	chr14:32069600-32102800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:32069800-32086000	Weak transcription	Fetal Kidney	kidney
9	chr14:32069800-32089800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:32069800-32089800	Weak transcription	Ovary	ovary
11	chr14:32069800-32091400	Weak transcription	Left Ventricle	heart
12	chr14:32076200-32089000	Weak transcription	Primary T cells from cord blood	blood
13	chr14:32076400-32091000	Weak transcription	A549	lung
14	chr14:32085200-32089800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links