Variant report

Variant	rs56293516
Chromosome Location	chr14:32279078-32279079
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10132896	0.84[ASN][1000 genomes]
rs11847399	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12431452	0.83[ASN][1000 genomes]
rs12432377	0.83[ASN][1000 genomes]
rs12434666	0.80[ASN][1000 genomes]
rs12437440	0.82[ASN][1000 genomes]
rs12586434	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12878817	0.81[ASN][1000 genomes]
rs12880119	0.83[ASN][1000 genomes]
rs12886280	0.83[ASN][1000 genomes]
rs12887004	0.83[ASN][1000 genomes]
rs1430425	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17379143	0.83[ASN][1000 genomes]
rs17463975	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2082167	0.80[ASN][1000 genomes]
rs2105275	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2151782	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28788900	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35588979	0.82[ASN][1000 genomes]
rs35650602	0.83[ASN][1000 genomes]
rs35722809	0.83[ASN][1000 genomes]
rs35746551	0.80[ASN][1000 genomes]
rs35875023	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36020968	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4514587	0.84[ASN][1000 genomes]
rs4981127	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4981908	0.80[AMR][1000 genomes]
rs4981915	0.82[ASN][1000 genomes]
rs4981916	0.82[ASN][1000 genomes]
rs56001625	0.82[ASN][1000 genomes]
rs60006676	0.83[ASN][1000 genomes]
rs61421033	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61996360	0.83[ASN][1000 genomes]
rs6571468	0.83[ASN][1000 genomes]
rs68170651	0.83[ASN][1000 genomes]
rs7141900	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7142429	0.83[ASN][1000 genomes]
rs7144386	0.83[ASN][1000 genomes]
rs7145749	0.80[ASN][1000 genomes]
rs7145823	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7156902	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7159758	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8010603	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8018532	0.83[ASN][1000 genomes]
rs8018901	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32250600-32322400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:32257600-32281200	Weak transcription	HepG2	liver
3	chr14:32263000-32287400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:32266800-32281000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:32270600-32281000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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