Variant report

Variant	rs12435732
Chromosome Location	chr14:24793897-24793898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr14:24793833-24794033	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24767930..24771021-chr14:24792565..24795803,5	MCF-7	breast:
2	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:
3	chr14:24791358..24808812-chr14:24895309..24913599,55	K562	blood:
4	chr14:24791657..24793644-chr14:24793834..24797111,3	MCF-7	breast:
5	chr14:24781460..24810019-chr14:24892340..24914262,110	MCF-7	breast:

No data

Variant related genes	Relation type
ADCY4	TF binding region
ENSG00000196943	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000100445	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11574504	1.00[TSI][hapmap]
rs1884366	0.83[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv564059	chr14:24776401-24796813	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv564060	chr14:24776401-24809795	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv516237	chr14:24793762-24799358	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24784600-24796400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr14:24784800-24796600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr14:24786200-24801600	Weak transcription	Left Ventricle	heart
4	chr14:24787000-24801200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:24787200-24796400	Weak transcription	Osteobl	bone
6	chr14:24788400-24801000	Weak transcription	Gastric	stomach
7	chr14:24790400-24796400	Weak transcription	Colonic Mucosa	Colon
8	chr14:24790600-24794400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr14:24790800-24795200	Strong transcription	Adipose Nuclei	Adipose
10	chr14:24791400-24794200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:24791600-24796600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:24792200-24798200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:24792600-24794400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr14:24792600-24794600	Weak transcription	Placenta	Placenta
15	chr14:24792600-24794800	Enhancers	K562	blood
16	chr14:24793400-24796400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:24793400-24796600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr14:24793400-24797400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:24793600-24794000	Flanking Bivalent TSS/Enh	HepG2	liver
20	chr14:24793600-24794200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:24793600-24794800	Enhancers	Primary hematopoietic stem cells	blood
22	chr14:24793600-24796600	Weak transcription	Lung	lung
23	chr14:24793800-24796400	Weak transcription	Spleen	Spleen
24	chr14:24793800-24797200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:24793800-24801000	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links