Variant report

Variant	rs11574504
Chromosome Location	chr14:24601465-24601466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr14:24601265-24602058	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:24581290..24596396-chr14:24599989..24617678,100	MCF-7	breast:
2	chr14:24601126..24603533-chr14:24656330..24657992,2	K562	blood:
3	chr14:24581146..24586451-chr14:24599665..24612678,16	K562	blood:
4	chr14:24562695..24566492-chr14:24599252..24601875,4	MCF-7	breast:

Variant related genes	Relation type
PSME1	TF binding region
ENSG00000259371	Chromatin interaction
ENSG00000100889	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000129535	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10132601	1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136840	1.00[AMR][1000 genomes]
rs10137012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138006	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10138628	1.00[AMR][1000 genomes]
rs10139890	1.00[AMR][1000 genomes]
rs10146394	1.00[AMR][1000 genomes]
rs10147702	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10148135	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs10150403	1.00[AMR][1000 genomes]
rs10151593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12435732	1.00[TSI][hapmap]
rs28420107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28473777	1.00[AMR][1000 genomes]
rs28482359	1.00[AMR][1000 genomes]
rs28528158	1.00[AMR][1000 genomes]
rs28604959	1.00[AMR][1000 genomes]
rs28625516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28673535	1.00[AMR][1000 genomes]
rs28674477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28810793	1.00[AMR][1000 genomes]
rs28861824	1.00[AMR][1000 genomes]
rs34861984	1.00[EUR][1000 genomes]
rs55754036	1.00[AMR][1000 genomes]
rs61737105	1.00[EUR][1000 genomes]
rs7151831	1.00[EUR][1000 genomes]
rs7152342	1.00[MEX][hapmap]
rs74037010	1.00[AMR][1000 genomes]
rs74040010	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv456168	chr14:24525634-24618859	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv564057	chr14:24525634-24618859	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv869985	chr14:24578013-24652669	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv901498	chr14:24591892-24662177	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24589000-24604400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:24589200-24604600	Weak transcription	A549	lung
3	chr14:24589400-24604800	Weak transcription	HUVEC	blood vessel
4	chr14:24590600-24604600	Weak transcription	NH-A	brain
5	chr14:24591200-24604600	Weak transcription	Fetal Kidney	kidney
6	chr14:24591200-24604600	Weak transcription	Stomach Mucosa	stomach
7	chr14:24591200-24604800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:24592400-24604400	Weak transcription	Hela-S3	cervix
9	chr14:24592400-24604600	Weak transcription	NHLF	lung
10	chr14:24592600-24604400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr14:24592600-24604400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:24592800-24604600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:24592800-24604600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr14:24593200-24604400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:24593200-24604600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:24593200-24604600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:24593400-24601800	Weak transcription	Esophagus	oesophagus
18	chr14:24593400-24604600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:24593400-24604600	Weak transcription	Brain Germinal Matrix	brain
20	chr14:24593400-24604600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr14:24593400-24604800	Weak transcription	Fetal Lung	lung
22	chr14:24593600-24601600	Weak transcription	Fetal Intestine Large	intestine
23	chr14:24593600-24604400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:24593600-24604400	Weak transcription	Dnd41	blood
25	chr14:24593600-24604600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:24593600-24604600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:24593600-24604600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:24593600-24604600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:24593600-24604600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:24593600-24604600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:24593600-24604600	Weak transcription	Brain Angular Gyrus	brain
32	chr14:24593600-24604600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr14:24593600-24604600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr14:24593600-24604600	Weak transcription	Colonic Mucosa	Colon
35	chr14:24593600-24604800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:24593800-24604600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:24593800-24604600	Weak transcription	Brain Anterior Caudate	brain
38	chr14:24593800-24604600	Weak transcription	Brain Substantia Nigra	brain
39	chr14:24593800-24604600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr14:24593800-24604600	Weak transcription	Fetal Brain Female	brain
41	chr14:24593800-24604600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr14:24593800-24604600	Weak transcription	Small Intestine	intestine
43	chr14:24593800-24604600	Weak transcription	Osteobl	bone
44	chr14:24593800-24604800	Weak transcription	Aorta	Aorta
45	chr14:24593800-24604800	Weak transcription	Ovary	ovary
46	chr14:24594000-24604400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr14:24594000-24604600	Weak transcription	Brain Hippocampus Middle	brain
48	chr14:24594200-24604400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr14:24595600-24604600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr14:24597800-24604200	Weak transcription	Primary B cells from cord blood	blood

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