Variant report

Variant	rs74037010
Chromosome Location	chr14:24707332-24707333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:32)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:32 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24707326-24707598	GM12878	blood:	n/a	n/a
2	POLR2A	chr14:24707278-24707563	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr14:24705324-24708328	GM12878	blood:	n/a	n/a
4	POLR2A	chr14:24707210-24707743	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr14:24707321-24707524	A549	lung:	n/a	n/a
6	POLR2A	chr14:24707183-24708732	HepG2	liver:	n/a	n/a
7	POLR2A	chr14:24707181-24707578	GM12891	blood:	n/a	n/a
8	POLR2A	chr14:24704697-24709817	GM12878	blood:	n/a	n/a
9	POLR2A	chr14:24700829-24709886	GM12891	blood:	n/a	n/a
10	POLR2A	chr14:24707267-24707603	GM12891	blood:	n/a	n/a
11	POLR2A	chr14:24704543-24710046	K562	blood:	n/a	n/a
12	POLR2A	chr14:24704835-24708499	GM12892	blood:	n/a	n/a
13	POLR2A	chr14:24706883-24707526	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr14:24707320-24707416	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr14:24699754-24707843	MCF10A-Er-Src	breast:	n/a	n/a
16	HEY1	chr14:24706930-24708450	HepG2	liver:	n/a	n/a
17	POLR2A	chr14:24707325-24707373	MCF-7	breast:	n/a	n/a
18	POLR2A	chr14:24707204-24707653	HepG2	liver:	n/a	n/a
19	POLR2A	chr14:24707064-24707436	GM12878	blood:	n/a	n/a
20	POLR2A	chr14:24707268-24713121	HepG2	liver:	n/a	n/a
21	POLR2A	chr14:24707183-24707667	ECC-1	luminal epithelium:	n/a	n/a
22	POLR2A	chr14:24707033-24712697	SK-N-MC	brain:	n/a	n/a
23	POLR2A	chr14:24700092-24709898	MCF10A-Er-Src	breast:	n/a	n/a
24	POLR2A	chr14:24707254-24707466	K562	blood:	n/a	n/a
25	POLR2A	chr14:24707228-24707667	GM12878	blood:	n/a	n/a
26	POLR2A	chr14:24705638-24710665	GM12892	blood:	n/a	n/a
27	POLR2A	chr14:24707190-24707737	GM12891	blood:	n/a	n/a
28	POLR2A	chr14:24706882-24707727	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr14:24707280-24707501	HepG2	liver:	n/a	n/a
30	POLR2A	chr14:24705340-24707695	GM12892	blood:	n/a	n/a
31	POLR2A	chr14:24700264-24710645	HepG2	liver:	n/a	n/a
32	MAX	chr14:24707215-24707694	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24583118..24584838-chr14:24705953..24708804,2	MCF-7	breast:
2	chr14:24658118..24660026-chr14:24704651..24707392,2	MCF-7	breast:
3	chr14:24706492..24710014-chr14:24739300..24741823,3	K562	blood:
4	chr14:24705394..24707456-chr14:24899113..24901085,2	MCF-7	breast:

No data

Variant related genes	Relation type
GMPR2	TF binding region
ENSG00000196497	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000259522	Chromatin interaction

rs_ID	r²[population]
rs10132601	1.00[AMR][1000 genomes]
rs10136189	1.00[AMR][1000 genomes]
rs10136840	1.00[AMR][1000 genomes]
rs10137012	1.00[AMR][1000 genomes]
rs10138628	1.00[AMR][1000 genomes]
rs10139890	1.00[AMR][1000 genomes]
rs10146394	1.00[AMR][1000 genomes]
rs10148135	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150403	1.00[AMR][1000 genomes]
rs10151593	1.00[AMR][1000 genomes]
rs11574504	1.00[AMR][1000 genomes]
rs28420107	1.00[AMR][1000 genomes]
rs28473777	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482359	1.00[AMR][1000 genomes]
rs28528158	1.00[AMR][1000 genomes]
rs28604959	1.00[AMR][1000 genomes]
rs28625516	1.00[AMR][1000 genomes]
rs28673535	1.00[AMR][1000 genomes]
rs28674477	1.00[AMR][1000 genomes]
rs28810793	1.00[AMR][1000 genomes]
rs28861824	1.00[AMR][1000 genomes]
rs55754036	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24702800-24711200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:24703000-24709600	Strong transcription	Fetal Muscle Trunk	muscle
3	chr14:24703000-24711000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:24703200-24708200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:24703200-24708600	Weak transcription	Stomach Mucosa	stomach
6	chr14:24703200-24709600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
7	chr14:24703400-24710200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:24703400-24710400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:24703400-24710400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:24703400-24710400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:24703400-24710600	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:24703600-24707400	Strong transcription	Placenta	Placenta
13	chr14:24703600-24708400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:24703600-24709000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:24703600-24709000	Strong transcription	Brain Substantia Nigra	brain
16	chr14:24703600-24709000	Weak transcription	Right Atrium	heart
17	chr14:24703600-24709600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:24703800-24707800	Strong transcription	Primary B cells from cord blood	blood
19	chr14:24703800-24708000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr14:24703800-24708400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:24703800-24709000	Strong transcription	Fetal Thymus	thymus
22	chr14:24703800-24709200	Strong transcription	Fetal Muscle Leg	muscle
23	chr14:24703800-24710400	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr14:24703800-24710400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr14:24704000-24707400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:24704000-24707600	Strong transcription	Primary T cells from cord blood	blood
27	chr14:24704000-24707600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr14:24704000-24708000	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:24704000-24708600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr14:24704000-24708800	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr14:24704000-24709000	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr14:24704000-24709000	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr14:24704000-24709200	Strong transcription	Brain Cingulate Gyrus	brain
34	chr14:24704000-24710600	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr14:24704200-24707400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:24704200-24707400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr14:24704200-24707800	Strong transcription	Adipose Nuclei	Adipose
38	chr14:24704200-24707800	Strong transcription	NH-A	brain
39	chr14:24704200-24708000	Strong transcription	Liver	Liver
40	chr14:24704200-24708000	Strong transcription	Duodenum Mucosa	Duodenum
41	chr14:24704200-24708200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr14:24704200-24708800	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr14:24704200-24709000	Strong transcription	Brain Anterior Caudate	brain
44	chr14:24704200-24709000	Weak transcription	Fetal Heart	heart
45	chr14:24704200-24709000	Strong transcription	Fetal Lung	lung
46	chr14:24704200-24710000	Strong transcription	A549	lung
47	chr14:24704200-24710600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr14:24704400-24707400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr14:24704400-24707400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr14:24704400-24707400	Strong transcription	Primary T helper cells fromperipheralblood	blood

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