Variant report

Variant	rs10136189
Chromosome Location	chr14:24558058-24558059
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24538729..24541418-chr14:24557989..24560836,2	MCF-7	breast:
2	chr14:24555104..24560736-chr14:24562087..24567430,10	MCF-7	breast:
3	chr14:24556820..24558966-chr14:24662557..24665113,2	MCF-7	breast:
4	chr14:24557331..24560354-chr14:24581689..24584302,3	MCF-7	breast:
5	chr14:24548337..24552694-chr14:24555718..24561079,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100884	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000100926	Chromatin interaction
ENSG00000100889	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10132601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136840	1.00[AMR][1000 genomes]
rs10137012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138006	1.00[EUR][1000 genomes]
rs10138628	1.00[AMR][1000 genomes]
rs10139890	1.00[AMR][1000 genomes]
rs10146394	1.00[AMR][1000 genomes]
rs10147702	1.00[EUR][1000 genomes]
rs10148135	1.00[AMR][1000 genomes]
rs10150403	1.00[AMR][1000 genomes]
rs10151593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11574504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28420107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28473777	1.00[AMR][1000 genomes]
rs28482359	1.00[AMR][1000 genomes]
rs28528158	1.00[AMR][1000 genomes]
rs28604959	1.00[AMR][1000 genomes]
rs28625516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28673535	1.00[AMR][1000 genomes]
rs28674477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28810793	1.00[AMR][1000 genomes]
rs28861824	1.00[AMR][1000 genomes]
rs34861984	1.00[EUR][1000 genomes]
rs55754036	1.00[AMR][1000 genomes]
rs61737105	1.00[EUR][1000 genomes]
rs7151831	1.00[EUR][1000 genomes]
rs74037010	1.00[AMR][1000 genomes]
rs74040010	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
5	nsv456168	chr14:24525634-24618859	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv564057	chr14:24525634-24618859	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24551000-24563400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:24551200-24562800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:24551200-24562800	Weak transcription	Spleen	Spleen
4	chr14:24551800-24561200	Weak transcription	Gastric	stomach
5	chr14:24552200-24559200	Weak transcription	Fetal Intestine Small	intestine
6	chr14:24552200-24562600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:24554400-24559600	Weak transcription	K562	blood
8	chr14:24554600-24559600	Weak transcription	Thymus	Thymus
9	chr14:24556200-24559200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:24556200-24559200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:24557600-24559600	Weak transcription	Fetal Intestine Large	intestine
12	chr14:24557600-24562800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:24557600-24562800	Weak transcription	Fetal Muscle Trunk	muscle

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