Variant report

Variant	rs28482359
Chromosome Location	chr14:24686653-24686654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24684749..24686832-chr14:50581728..50584528,2	MCF-7	breast:
2	chr14:24682906..24687740-chr14:24707883..24712855,6	K562	blood:
3	chr14:24653860..24661964-chr14:24680820..24687057,41	MCF-7	breast:
4	chr14:24683967..24686751-chr14:24798225..24800322,2	MCF-7	breast:
5	chr14:24682270..24687913-chr14:24764870..24771791,12	MCF-7	breast:
6	chr14:24627382..24636644-chr14:24680297..24686914,11	MCF-7	breast:
7	chr14:24685104..24687849-chr14:24703499..24706342,3	K562	blood:
8	chr14:24682332..24685366-chr14:24686250..24689239,4	K562	blood:
9	chr14:24567915..24570074-chr14:24684734..24686679,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196943	Chromatin interaction
ENSG00000100483	Chromatin interaction
ENSG00000259522	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000100889	Chromatin interaction
ENSG00000213928	Chromatin interaction
ENSG00000254692	Chromatin interaction
ENSG00000100938	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000260669	Chromatin interaction
ENSG00000092330	Chromatin interaction
ENSG00000199804	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000213920	Chromatin interaction
ENSG00000092098	Chromatin interaction

rs_ID	r²[population]
rs10132601	1.00[AMR][1000 genomes]
rs10136189	1.00[AMR][1000 genomes]
rs10136840	1.00[AMR][1000 genomes]
rs10137012	1.00[AMR][1000 genomes]
rs10138628	1.00[AMR][1000 genomes]
rs10139890	1.00[AMR][1000 genomes]
rs10146394	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148135	1.00[AMR][1000 genomes]
rs10150403	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151593	1.00[AMR][1000 genomes]
rs11574504	1.00[AMR][1000 genomes]
rs28420107	1.00[AMR][1000 genomes]
rs28473777	1.00[AMR][1000 genomes]
rs28528158	1.00[AMR][1000 genomes]
rs28604959	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28625516	1.00[AMR][1000 genomes]
rs28673535	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28674477	1.00[AMR][1000 genomes]
rs28810793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28861824	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55754036	1.00[AMR][1000 genomes]
rs74037010	1.00[AMR][1000 genomes]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24685400-24687200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:24685400-24687400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:24685400-24691200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:24685400-24697200	Weak transcription	Ovary	ovary
5	chr14:24685400-24700000	Weak transcription	Spleen	Spleen
6	chr14:24685400-24700200	Weak transcription	Colonic Mucosa	Colon
7	chr14:24685400-24700200	Weak transcription	Gastric	stomach
8	chr14:24685400-24700400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:24685600-24687000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:24685600-24687200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:24685600-24687200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:24685600-24687200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:24685600-24687200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr14:24685600-24687600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:24685600-24687800	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr14:24685600-24692000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:24685600-24694000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:24685600-24700200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:24685600-24700200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:24685600-24700200	Weak transcription	Esophagus	oesophagus
21	chr14:24685600-24700200	Weak transcription	Psoas Muscle	Psoas
22	chr14:24685600-24700200	Weak transcription	Thymus	Thymus
23	chr14:24685600-24700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:24685600-24700400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:24685600-24700400	Weak transcription	Fetal Kidney	kidney
26	chr14:24685600-24700400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr14:24685600-24700400	Weak transcription	K562	blood
28	chr14:24685600-24700600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr14:24685800-24687000	Weak transcription	Adipose Nuclei	Adipose
30	chr14:24685800-24687000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr14:24685800-24687000	Weak transcription	A549	lung
32	chr14:24685800-24687200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:24685800-24687200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:24685800-24687200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:24685800-24687200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:24685800-24687200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:24685800-24687200	Weak transcription	Fetal Brain Female	brain
38	chr14:24685800-24687200	Weak transcription	Fetal Intestine Large	intestine
39	chr14:24685800-24687200	Weak transcription	HUVEC	blood vessel
40	chr14:24685800-24687200	Weak transcription	NHLF	lung
41	chr14:24685800-24687600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:24685800-24687600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:24685800-24687600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:24685800-24687600	Strong transcription	Fetal Thymus	thymus
45	chr14:24685800-24687600	Strong transcription	NHEK	skin
46	chr14:24685800-24687800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:24685800-24687800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:24685800-24687800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr14:24685800-24687800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr14:24685800-24687800	Strong transcription	Fetal Muscle Leg	muscle

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