Variant report

Variant	rs28604959
Chromosome Location	chr14:24688854-24688855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24688754-24688950	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24682332..24685366-chr14:24686250..24689239,4	K562	blood:

Variant related genes	Relation type
NEDD8	TF binding region
ENSG00000260669	TF binding region
MDP1	TF binding region
ENSG00000254505	Chromatin interaction
ENSG00000260669	Chromatin interaction
ENSG00000254692	Chromatin interaction
ENSG00000213920	Chromatin interaction

rs_ID	r²[population]
rs10132601	1.00[AMR][1000 genomes]
rs10136189	1.00[AMR][1000 genomes]
rs10136840	1.00[AMR][1000 genomes]
rs10137012	1.00[AMR][1000 genomes]
rs10138628	1.00[AMR][1000 genomes]
rs10139890	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148135	1.00[AMR][1000 genomes]
rs10150403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151593	1.00[AMR][1000 genomes]
rs11574504	1.00[AMR][1000 genomes]
rs28420107	1.00[AMR][1000 genomes]
rs28473777	1.00[AMR][1000 genomes]
rs28482359	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28528158	1.00[AMR][1000 genomes]
rs28625516	1.00[AMR][1000 genomes]
rs28673535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28674477	1.00[AMR][1000 genomes]
rs28810793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28861824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55754036	1.00[AMR][1000 genomes]
rs74037010	1.00[AMR][1000 genomes]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24685400-24691200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:24685400-24697200	Weak transcription	Ovary	ovary
3	chr14:24685400-24700000	Weak transcription	Spleen	Spleen
4	chr14:24685400-24700200	Weak transcription	Colonic Mucosa	Colon
5	chr14:24685400-24700200	Weak transcription	Gastric	stomach
6	chr14:24685400-24700400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:24685600-24692000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:24685600-24694000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:24685600-24700200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:24685600-24700200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:24685600-24700200	Weak transcription	Esophagus	oesophagus
12	chr14:24685600-24700200	Weak transcription	Psoas Muscle	Psoas
13	chr14:24685600-24700200	Weak transcription	Thymus	Thymus
14	chr14:24685600-24700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:24685600-24700400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:24685600-24700400	Weak transcription	Fetal Kidney	kidney
17	chr14:24685600-24700400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:24685600-24700400	Weak transcription	K562	blood
19	chr14:24685600-24700600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:24685800-24689000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:24685800-24690000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr14:24685800-24690600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr14:24685800-24691200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:24685800-24691800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:24685800-24694200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr14:24685800-24696000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr14:24685800-24696400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr14:24685800-24697400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:24685800-24698200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr14:24685800-24699000	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr14:24685800-24699000	Weak transcription	Pancreas	Pancrea
32	chr14:24685800-24700000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr14:24685800-24700000	Weak transcription	Colon Smooth Muscle	Colon
34	chr14:24685800-24700000	Weak transcription	Lung	lung
35	chr14:24685800-24700200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:24685800-24700200	Weak transcription	Brain Anterior Caudate	brain
37	chr14:24685800-24700200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:24685800-24700200	Weak transcription	Brain Germinal Matrix	brain
39	chr14:24685800-24700200	Weak transcription	Brain Hippocampus Middle	brain
40	chr14:24685800-24700200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr14:24685800-24700200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr14:24685800-24700400	Weak transcription	Brain Angular Gyrus	brain
43	chr14:24686000-24690200	Weak transcription	Fetal Heart	heart
44	chr14:24686000-24690400	Strong transcription	HepG2	liver
45	chr14:24686000-24690600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:24686000-24696400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr14:24686000-24700000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr14:24686000-24700000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr14:24686000-24700000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr14:24686200-24700000	Weak transcription	Fetal Brain Male	brain

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