Variant report

Variant	rs28473777
Chromosome Location	chr14:24713421-24713422
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24710859-24714651	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24581877..24583697-chr14:24712197..24714033,2	K562	blood:
2	chr14:24682802..24685207-chr14:24711355..24714494,4	K562	blood:
3	chr14:24711926..24713441-chr14:24728072..24729848,2	K562	blood:
4	chr14:24711967..24714096-chr14:24723458..24727620,4	K562	blood:
5	chr14:24712622..24713495-chr14:24768535..24769517,2	MCF-7	breast:
6	chr14:24656097..24659538-chr14:24709665..24713530,7	MCF-7	breast:
7	chr14:24709884..24713728-chr14:24799730..24804763,6	MCF-7	breast:
8	chr14:24711225..24713495-chr14:24896859..24899429,2	K562	blood:
9	chr14:24711970..24713613-chr14:24750693..24753495,2	K562	blood:
10	chr14:24709953..24714493-chr14:24766859..24769769,8	K562	blood:
11	chr14:24709953..24713670-chr14:24767111..24769746,6	K562	blood:
12	chr14:24711870..24713626-chr14:24841435..24843372,2	K562	blood:
13	chr14:24708551..24715320-chr14:24722643..24727115,8	K562	blood:
14	chr14:24710128..24713467-chr14:24737949..24741923,9	K562	blood:

No data

Variant related genes	Relation type
TINF2	TF binding region
ENSG00000100897	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000092295	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000213920	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000260669	Chromatin interaction
ENSG00000129467	Chromatin interaction

rs_ID	r²[population]
rs10132601	1.00[AMR][1000 genomes]
rs10136189	1.00[AMR][1000 genomes]
rs10136840	1.00[AMR][1000 genomes]
rs10137012	1.00[AMR][1000 genomes]
rs10138628	1.00[AMR][1000 genomes]
rs10139890	1.00[AMR][1000 genomes]
rs10146394	1.00[AMR][1000 genomes]
rs10148135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150403	1.00[AMR][1000 genomes]
rs10151593	1.00[AMR][1000 genomes]
rs11574504	1.00[AMR][1000 genomes]
rs28420107	1.00[AMR][1000 genomes]
rs28482359	1.00[AMR][1000 genomes]
rs28528158	1.00[AMR][1000 genomes]
rs28604959	1.00[AMR][1000 genomes]
rs28625516	1.00[AMR][1000 genomes]
rs28673535	1.00[AMR][1000 genomes]
rs28674477	1.00[AMR][1000 genomes]
rs28810793	1.00[AMR][1000 genomes]
rs28861824	1.00[AMR][1000 genomes]
rs55754036	1.00[AMR][1000 genomes]
rs74037010	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24712200-24723200	Weak transcription	Gastric	stomach
2	chr14:24712200-24724200	Weak transcription	Ovary	ovary
3	chr14:24712600-24720600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:24712600-24727600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:24712600-24740000	Weak transcription	Small Intestine	intestine
6	chr14:24712800-24714000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr14:24712800-24717200	Weak transcription	Esophagus	oesophagus
8	chr14:24712800-24718200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:24712800-24721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:24712800-24723800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:24713000-24718400	Weak transcription	Fetal Stomach	stomach
12	chr14:24713000-24722000	Weak transcription	Fetal Brain Female	brain
13	chr14:24713000-24723000	Weak transcription	Brain Angular Gyrus	brain
14	chr14:24713000-24723200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr14:24713000-24723400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:24713000-24723400	Weak transcription	Pancreas	Pancrea
17	chr14:24713000-24734200	Weak transcription	Left Ventricle	heart
18	chr14:24713000-24740000	Weak transcription	Right Atrium	heart
19	chr14:24713200-24713600	Enhancers	HepG2	liver
20	chr14:24713200-24713800	Active TSS	Placenta	Placenta
21	chr14:24713200-24714600	Weak transcription	NHDF-Ad	bronchial
22	chr14:24713200-24714800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr14:24713200-24715600	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr14:24713200-24715600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:24713200-24715600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:24713200-24715800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:24713200-24715800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr14:24713200-24715800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr14:24713200-24715800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr14:24713200-24715800	Weak transcription	Fetal Intestine Large	intestine
31	chr14:24713200-24715800	Weak transcription	Fetal Intestine Small	intestine
32	chr14:24713200-24715800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr14:24713200-24715800	Weak transcription	Stomach Mucosa	stomach
34	chr14:24713200-24716000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:24713200-24716000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:24713200-24716000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr14:24713200-24716000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:24713200-24716000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr14:24713200-24716000	Weak transcription	Liver	Liver
40	chr14:24713200-24716000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr14:24713200-24716000	Weak transcription	Spleen	Spleen
42	chr14:24713200-24716000	Weak transcription	K562	blood
43	chr14:24713200-24717600	Weak transcription	Fetal Brain Male	brain
44	chr14:24713200-24718200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:24713200-24718200	Weak transcription	Lung	lung
46	chr14:24713200-24718600	Weak transcription	Primary T cells from cord blood	blood
47	chr14:24713200-24720600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr14:24713200-24720600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr14:24713200-24720800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:24713200-24720800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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