Variant report

Variant	rs10137012
Chromosome Location	chr14:24560428-24560429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24530314..24532732-chr14:24558824..24560499,2	MCF-7	breast:
2	chr14:24553933..24556292-chr14:24559960..24561703,2	K562	blood:
3	chr14:24527144..24528521-chr14:24559426..24560661,30	MCF-7	breast:
4	chr14:24538729..24541418-chr14:24557989..24560836,2	MCF-7	breast:
5	chr14:24528168..24530013-chr14:24559103..24561456,2	MCF-7	breast:
6	chr14:24555104..24560736-chr14:24562087..24567430,10	MCF-7	breast:
7	chr14:24545719..24548235-chr14:24559934..24562194,2	MCF-7	breast:
8	chr14:24558420..24561754-chr14:24562425..24566157,5	K562	blood:
9	chr14:24483165..24483827-chr14:24559565..24560642,4	MCF-7	breast:
10	chr14:24548337..24552694-chr14:24555718..24561079,7	MCF-7	breast:
11	chr14:24559495..24561596-chr14:24629782..24631905,2	K562	blood:
12	chr14:24525567..24528121-chr14:24559666..24562696,4	MCF-7	breast:
13	chr14:24559892..24561596-chr14:24629476..24631905,2	K562	blood:
14	chr14:24525209..24530218-chr14:24558349..24561579,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100884	Chromatin interaction
ENSG00000186648	Chromatin interaction
ENSG00000100889	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000213928	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10132601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136840	1.00[AMR][1000 genomes]
rs10138006	1.00[EUR][1000 genomes]
rs10138628	1.00[AMR][1000 genomes]
rs10139890	1.00[AMR][1000 genomes]
rs10146394	1.00[AMR][1000 genomes]
rs10147702	1.00[EUR][1000 genomes]
rs10148135	1.00[AMR][1000 genomes]
rs10150403	1.00[AMR][1000 genomes]
rs10151593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11574504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28420107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28473777	1.00[AMR][1000 genomes]
rs28482359	1.00[AMR][1000 genomes]
rs28528158	1.00[AMR][1000 genomes]
rs28604959	1.00[AMR][1000 genomes]
rs28625516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28673535	1.00[AMR][1000 genomes]
rs28674477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28810793	1.00[AMR][1000 genomes]
rs28861824	1.00[AMR][1000 genomes]
rs34861984	1.00[EUR][1000 genomes]
rs55754036	1.00[AMR][1000 genomes]
rs61737105	1.00[EUR][1000 genomes]
rs7151831	1.00[EUR][1000 genomes]
rs74037010	1.00[AMR][1000 genomes]
rs74040010	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
5	nsv456168	chr14:24525634-24618859	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv564057	chr14:24525634-24618859	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24551000-24563400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:24551200-24562800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:24551200-24562800	Weak transcription	Spleen	Spleen
4	chr14:24551800-24561200	Weak transcription	Gastric	stomach
5	chr14:24552200-24562600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:24557600-24562800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:24557600-24562800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:24558800-24560600	Enhancers	HepG2	liver
9	chr14:24558800-24562800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:24559200-24562600	Enhancers	Fetal Intestine Small	intestine
11	chr14:24559200-24562800	Enhancers	Liver	Liver
12	chr14:24559600-24562200	Enhancers	Duodenum Mucosa	Duodenum
13	chr14:24559600-24562800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr14:24559600-24563200	Enhancers	Fetal Intestine Large	intestine
15	chr14:24559800-24561200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr14:24559800-24561200	Weak transcription	Stomach Mucosa	stomach
17	chr14:24559800-24562200	Weak transcription	Fetal Muscle Leg	muscle
18	chr14:24559800-24562400	Weak transcription	Brain Angular Gyrus	brain
19	chr14:24559800-24562400	Weak transcription	A549	lung
20	chr14:24559800-24562600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:24559800-24562800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr14:24559800-24562800	Weak transcription	Brain Anterior Caudate	brain
23	chr14:24559800-24563000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:24559800-24563000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:24560000-24560800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr14:24560000-24561800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr14:24560000-24562600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr14:24560000-24562800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr14:24560000-24562800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:24560000-24562800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr14:24560000-24562800	Weak transcription	Fetal Stomach	stomach
32	chr14:24560000-24562800	Weak transcription	Thymus	Thymus
33	chr14:24560000-24563000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:24560200-24561200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr14:24560200-24561200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr14:24560200-24561400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:24560200-24561400	Weak transcription	Hela-S3	cervix
38	chr14:24560200-24561400	Weak transcription	K562	blood
39	chr14:24560200-24561600	Weak transcription	Brain Hippocampus Middle	brain
40	chr14:24560200-24562200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr14:24560200-24562200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:24560200-24562200	Weak transcription	Dnd41	blood
43	chr14:24560200-24562400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr14:24560200-24562400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr14:24560200-24562600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr14:24560200-24562600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr14:24560200-24562600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr14:24560200-24562600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr14:24560200-24562600	Weak transcription	Fetal Thymus	thymus
50	chr14:24560200-24562800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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