Variant report

Variant	rs61737105
Chromosome Location	chr14:24614618-24614619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MBD4	chr14:24614526-24618137	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:24614338-24615337	GM12892	blood:	n/a	n/a
3	POLR2A	chr14:24613910-24615256	GM12878	blood:	n/a	n/a
4	MTA3	chr14:24614588-24617521	GM12878	blood:	n/a	n/a
5	POLR2A	chr14:24614099-24618084	HepG2	liver:	n/a	n/a
6	POLR2A	chr14:24614338-24614672	GM12878	blood:	n/a	n/a
7	MYBL2	chr14:24614128-24617738	HepG2	liver:	n/a	n/a
8	POLR2A	chr14:24614309-24614820	GM12892	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24613791..24615976-chr14:24629149..24631739,3	K562	blood:
2	chr14:24581290..24596396-chr14:24599989..24617678,100	MCF-7	breast:
3	chr14:24562089..24565066-chr14:24613987..24617513,5	K562	blood:
4	chr14:24543783..24548039-chr14:24613906..24618188,3	K562	blood:
5	chr14:24581369..24585731-chr14:24613808..24618502,7	K562	blood:
6	chr14:24613977..24617454-chr14:24767400..24769438,3	K562	blood:
7	chr14:24613270..24615073-chr14:24616528..24618160,2	K562	blood:
8	chr14:24581756..24587936-chr14:24614253..24620861,10	K562	blood:
9	chr14:24614107..24617488-chr14:24678980..24682276,4	K562	blood:

No data

Variant related genes	Relation type
PSME2	TF binding region
EMC9	TF binding region
RNF31	TF binding region
ENSG00000100884	Chromatin interaction
ENSG00000100911	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000213928	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000100889	Chromatin interaction
ENSG00000259371	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000196943	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10132601	1.00[EUR][1000 genomes]
rs10136189	1.00[EUR][1000 genomes]
rs10137012	1.00[EUR][1000 genomes]
rs10138006	1.00[EUR][1000 genomes]
rs10147702	1.00[EUR][1000 genomes]
rs10151593	1.00[EUR][1000 genomes]
rs11574504	1.00[EUR][1000 genomes]
rs28420107	1.00[EUR][1000 genomes]
rs28625516	1.00[EUR][1000 genomes]
rs28674477	1.00[EUR][1000 genomes]
rs34861984	1.00[EUR][1000 genomes]
rs7151831	1.00[EUR][1000 genomes]
rs74040010	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv456168	chr14:24525634-24618859	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv564057	chr14:24525634-24618859	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv869985	chr14:24578013-24652669	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv901498	chr14:24591892-24662177	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24611400-24615200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:24611400-24615400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:24611600-24614800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:24611600-24614800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
5	chr14:24611600-24614800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:24611600-24614800	Weak transcription	Brain Substantia Nigra	brain
7	chr14:24611600-24615000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:24611600-24615000	Weak transcription	Fetal Kidney	kidney
9	chr14:24611600-24615000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:24611600-24615000	Genic enhancers	Fetal Thymus	thymus
11	chr14:24611600-24615000	Weak transcription	HSMMtube	muscle
12	chr14:24611600-24615200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:24611800-24615000	Weak transcription	Fetal Brain Female	brain
14	chr14:24612000-24614800	Weak transcription	Fetal Brain Male	brain
15	chr14:24612000-24614800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
16	chr14:24612000-24615000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:24612200-24615000	Weak transcription	Brain Angular Gyrus	brain
18	chr14:24612600-24615200	Genic enhancers	Spleen	Spleen
19	chr14:24612800-24614800	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr14:24613600-24614800	Weak transcription	Psoas Muscle	Psoas
21	chr14:24613800-24614800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr14:24613800-24615000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:24614000-24614800	Genic enhancers	Primary B cells from cord blood	blood
24	chr14:24614000-24614800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr14:24614000-24614800	Enhancers	Stomach Smooth Muscle	stomach
26	chr14:24614000-24614800	Genic enhancers	Thymus	Thymus
27	chr14:24614000-24615000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:24614000-24615200	Enhancers	Small Intestine	intestine
29	chr14:24614200-24614800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:24614200-24614800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:24614200-24614800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:24614200-24614800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr14:24614200-24614800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:24614200-24614800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr14:24614200-24614800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:24614200-24614800	Enhancers	K562	blood
37	chr14:24614200-24615000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:24614200-24615000	Enhancers	Brain Hippocampus Middle	brain
39	chr14:24614200-24615000	Enhancers	Pancreas	Pancrea
40	chr14:24614200-24615200	Enhancers	Left Ventricle	heart
41	chr14:24614200-24615200	Enhancers	Placenta Amnion	Placenta Amnion
42	chr14:24614200-24615600	Flanking Active TSS	Hela-S3	cervix
43	chr14:24614200-24615800	Transcr. at gene 5' and 3'	Dnd41	blood
44	chr14:24614400-24614800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:24614400-24614800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr14:24614400-24615000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr14:24614400-24615000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:24614400-24615000	Genic enhancers	Primary B cells from peripheral blood	blood
49	chr14:24614400-24615000	Enhancers	Primary T cells fromperipheralblood	blood
50	chr14:24614400-24615000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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