Variant report

Variant	rs12435758
Chromosome Location	chr14:56376659-56376660
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12431769	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12432219	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12588046	0.91[ASN][1000 genomes]
rs12588536	0.98[ASN][1000 genomes]
rs17128889	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4898876	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4898877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57760336	0.98[ASN][1000 genomes]
rs58259073	0.98[ASN][1000 genomes]
rs59107043	0.92[ASN][1000 genomes]
rs72723598	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8016445	0.82[JPT][hapmap]
rs8016568	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56371400-56377200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:56371400-56377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:56371600-56381600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:56373200-56392000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:56373600-56378000	Enhancers	Fetal Brain Male	brain
6	chr14:56375400-56376800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:56375400-56377000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:56375600-56377200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:56375600-56377400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:56375600-56380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:56375800-56377000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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