Variant report

Variant	rs57760336
Chromosome Location	chr14:56375625-56375626
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1112305	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12435758	0.98[ASN][1000 genomes]
rs12437135	0.84[EUR][1000 genomes]
rs12588046	0.92[ASN][1000 genomes]
rs12588536	1.00[ASN][1000 genomes]
rs17128903	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17128904	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55807948	0.95[EUR][1000 genomes]
rs57454285	0.95[EUR][1000 genomes]
rs57999134	0.95[EUR][1000 genomes]
rs58259073	1.00[ASN][1000 genomes]
rs59107043	0.94[ASN][1000 genomes]
rs59855506	0.95[EUR][1000 genomes]
rs60003406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573069	0.95[EUR][1000 genomes]
rs7146524	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7148653	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73276013	0.95[EUR][1000 genomes]
rs73276024	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73276039	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73276040	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73276047	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73276052	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73276060	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73276063	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73276064	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73276066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276068	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016445	0.81[ASN][1000 genomes]
rs8016568	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56371400-56377200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:56371400-56377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:56371600-56381600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:56373200-56392000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:56373600-56378000	Enhancers	Fetal Brain Male	brain
6	chr14:56374600-56375800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr14:56375400-56375800	Enhancers	Fetal Brain Female	brain
8	chr14:56375400-56376000	Enhancers	Brain Cingulate Gyrus	brain
9	chr14:56375400-56376800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:56375400-56377000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:56375600-56377200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:56375600-56377400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:56375600-56380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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