Variant report

Variant	rs57454285
Chromosome Location	chr14:56357324-56357325
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1112305	0.95[EUR][1000 genomes]
rs12437135	0.88[EUR][1000 genomes]
rs17128903	1.00[EUR][1000 genomes]
rs17128904	1.00[EUR][1000 genomes]
rs55807948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57760336	0.95[EUR][1000 genomes]
rs57999134	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59855506	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60003406	0.95[EUR][1000 genomes]
rs6573069	1.00[EUR][1000 genomes]
rs7146524	0.87[EUR][1000 genomes]
rs7148653	0.98[EUR][1000 genomes]
rs73276013	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276024	1.00[EUR][1000 genomes]
rs73276039	0.98[EUR][1000 genomes]
rs73276040	0.98[EUR][1000 genomes]
rs73276047	0.98[EUR][1000 genomes]
rs73276052	1.00[EUR][1000 genomes]
rs73276060	1.00[EUR][1000 genomes]
rs73276063	1.00[EUR][1000 genomes]
rs73276064	1.00[EUR][1000 genomes]
rs73276066	0.95[EUR][1000 genomes]
rs73276068	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56349800-56358800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:56356000-56357400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:56356000-56357800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:56356000-56358000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:56356000-56360200	Weak transcription	Fetal Brain Male	brain
6	chr14:56356000-56361200	Weak transcription	Fetal Brain Female	brain
7	chr14:56356200-56357600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:56356200-56358000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:56356200-56359200	Weak transcription	Psoas Muscle	Psoas
10	chr14:56356200-56359400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:56356200-56360600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:56356200-56362600	Weak transcription	Brain Anterior Caudate	brain
13	chr14:56356400-56358800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr14:56356400-56360000	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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