Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1112305	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12437135	0.86[EUR][1000 genomes]
rs17128903	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17128904	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55807948	0.98[EUR][1000 genomes]
rs57454285	0.98[EUR][1000 genomes]
rs57760336	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57999134	0.98[EUR][1000 genomes]
rs59855506	0.98[EUR][1000 genomes]
rs60003406	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6573069	0.98[EUR][1000 genomes]
rs7146524	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7148653	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276013	0.98[EUR][1000 genomes]
rs73276024	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276047	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276060	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276063	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276064	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276066	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73276068	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56359800-56374400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr14:56361400-56365600	Weak transcription	Psoas Muscle	Psoas
3	chr14:56361800-56363600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:56362800-56363600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:56363000-56370200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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