Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1112305	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12437135	0.86[EUR][1000 genomes]
rs17128903	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17128904	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55807948	0.98[EUR][1000 genomes]
rs57454285	0.98[EUR][1000 genomes]
rs57760336	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57999134	0.98[EUR][1000 genomes]
rs59855506	0.98[EUR][1000 genomes]
rs60003406	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6573069	0.98[EUR][1000 genomes]
rs7146524	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73276013	0.98[EUR][1000 genomes]
rs73276024	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276039	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276040	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276047	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276052	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276060	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276063	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276064	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276066	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73276068	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56356000-56361200	Weak transcription	Fetal Brain Female	brain
2	chr14:56356200-56360600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:56356200-56362600	Weak transcription	Brain Anterior Caudate	brain
4	chr14:56359200-56361400	Enhancers	Psoas Muscle	Psoas
5	chr14:56359400-56361400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr14:56359600-56362600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:56359800-56362800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:56359800-56374400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:56360000-56360400	Enhancers	Colon Smooth Muscle	Colon
10	chr14:56360200-56360800	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr14:56360200-56361000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr14:56360200-56363000	Enhancers	Fetal Brain Male	brain

Quick Search: