Variant report

Variant	rs12437135
Chromosome Location	chr14:56353379-56353380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1112305	0.84[EUR][1000 genomes]
rs17128903	0.88[EUR][1000 genomes]
rs17128904	0.88[EUR][1000 genomes]
rs55807948	0.88[EUR][1000 genomes]
rs57454285	0.88[EUR][1000 genomes]
rs57760336	0.84[EUR][1000 genomes]
rs57999134	0.88[EUR][1000 genomes]
rs59855506	0.88[EUR][1000 genomes]
rs60003406	0.84[EUR][1000 genomes]
rs6573069	0.88[EUR][1000 genomes]
rs7148653	0.86[EUR][1000 genomes]
rs73276013	0.88[EUR][1000 genomes]
rs73276024	0.88[EUR][1000 genomes]
rs73276039	0.86[EUR][1000 genomes]
rs73276040	0.86[EUR][1000 genomes]
rs73276047	0.86[EUR][1000 genomes]
rs73276052	0.88[EUR][1000 genomes]
rs73276060	0.88[EUR][1000 genomes]
rs73276063	0.88[EUR][1000 genomes]
rs73276064	0.88[EUR][1000 genomes]
rs73276066	0.84[EUR][1000 genomes]
rs73276068	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56348800-56355200	Weak transcription	Esophagus	oesophagus
2	chr14:56349800-56358800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:56350800-56354200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr14:56351400-56355200	Weak transcription	Fetal Brain Female	brain
5	chr14:56352000-56355200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:56352000-56355800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:56352000-56355800	Weak transcription	NHEK	skin
8	chr14:56352200-56355000	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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