Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56361180..56363338-chr14:56369643..56372390,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1112305	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12437135	0.88[EUR][1000 genomes]
rs17128903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55807948	1.00[EUR][1000 genomes]
rs57454285	1.00[EUR][1000 genomes]
rs57760336	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57999134	1.00[EUR][1000 genomes]
rs59855506	1.00[EUR][1000 genomes]
rs60003406	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6573069	1.00[EUR][1000 genomes]
rs7146524	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7148653	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276013	1.00[EUR][1000 genomes]
rs73276024	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276039	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276040	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276047	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73276052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276066	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73276068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56359800-56374400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr14:56368200-56374800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:56368400-56370800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:56369400-56372600	Weak transcription	Aorta	Aorta
5	chr14:56370200-56371400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr14:56370200-56371600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:56370400-56371800	Enhancers	HSMMtube	muscle
8	chr14:56370600-56371000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr14:56370600-56371400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:56370600-56371400	Enhancers	Brain Anterior Caudate	brain
11	chr14:56370600-56371400	Enhancers	Psoas Muscle	Psoas
12	chr14:56370600-56371400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr14:56370600-56371600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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