Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1112305	0.95[EUR][1000 genomes]
rs12437135	0.88[EUR][1000 genomes]
rs17128903	1.00[EUR][1000 genomes]
rs17128904	1.00[EUR][1000 genomes]
rs55807948	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57454285	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57760336	0.95[EUR][1000 genomes]
rs57999134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60003406	0.95[EUR][1000 genomes]
rs6573069	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7146524	0.87[EUR][1000 genomes]
rs7148653	0.98[EUR][1000 genomes]
rs73276013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276024	1.00[EUR][1000 genomes]
rs73276039	0.98[EUR][1000 genomes]
rs73276040	0.98[EUR][1000 genomes]
rs73276047	0.98[EUR][1000 genomes]
rs73276052	1.00[EUR][1000 genomes]
rs73276060	1.00[EUR][1000 genomes]
rs73276063	1.00[EUR][1000 genomes]
rs73276064	1.00[EUR][1000 genomes]
rs73276066	0.95[EUR][1000 genomes]
rs73276068	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56348800-56355200	Weak transcription	Esophagus	oesophagus
2	chr14:56349800-56358800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:56351400-56355200	Weak transcription	Fetal Brain Female	brain
4	chr14:56352000-56355200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:56352000-56355800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:56352000-56355800	Weak transcription	NHEK	skin
7	chr14:56354000-56355800	Weak transcription	Brain Anterior Caudate	brain
8	chr14:56354600-56356200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:56354600-56356200	Enhancers	Brain Germinal Matrix	brain
10	chr14:56355000-56356000	Enhancers	Pancreas	Pancrea
11	chr14:56355000-56356200	Enhancers	Psoas Muscle	Psoas
12	chr14:56355000-56356200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr14:56355000-56356400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr14:56355000-56356400	Enhancers	HMEC	breast

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