Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71688920..71691041-chr14:71691628..71693496,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10129258	0.97[ASN][1000 genomes]
rs10133468	0.94[ASN][1000 genomes]
rs10136305	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10139524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10145569	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs10149204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10873245	0.93[ASN][1000 genomes]
rs11158897	0.91[ASN][1000 genomes]
rs11158899	0.96[ASN][1000 genomes]
rs11850277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12432518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433619	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12433847	0.96[ASN][1000 genomes]
rs12884828	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs12896453	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158532	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3742845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4899391	0.93[ASN][1000 genomes]
rs6574008	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs6574010	0.88[ASN][1000 genomes]
rs8012457	0.91[ASN][1000 genomes]
rs8013728	0.91[ASN][1000 genomes]
rs8023180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71680600-71702600	Weak transcription	Brain Angular Gyrus	brain
2	chr14:71680800-71691800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:71682600-71694800	Weak transcription	Pancreas	Pancrea
4	chr14:71687400-71699000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:71689000-71695000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:71691600-71691800	Weak transcription	K562	blood
7	chr14:71691600-71692000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr14:71691600-71692000	Enhancers	Brain Substantia Nigra	brain
9	chr14:71691600-71692000	Enhancers	Ovary	ovary

Quick Search: