Variant report
| Variant | rs12437069 |
|---|---|
| Chromosome Location | chr14:79858654-79858655 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10144614 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10873321 | 0.94[EUR][1000 genomes] |
| rs11159407 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12894761 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2167152 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2196443 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2197989 | 0.94[EUR][1000 genomes] |
| rs2197990 | 0.92[EUR][1000 genomes] |
| rs2197992 | 0.92[EUR][1000 genomes] |
| rs2197993 | 0.92[EUR][1000 genomes] |
| rs2218783 | 0.89[EUR][1000 genomes] |
| rs2218784 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2370975 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2370980 | 0.92[EUR][1000 genomes] |
| rs2574753 | 0.92[EUR][1000 genomes] |
| rs2597088 | 0.92[EUR][1000 genomes] |
| rs2597090 | 0.92[EUR][1000 genomes] |
| rs2597093 | 0.86[EUR][1000 genomes] |
| rs2887911 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4243663 | 0.93[EUR][1000 genomes] |
| rs4899740 | 0.88[EUR][1000 genomes] |
| rs4899741 | 0.89[EUR][1000 genomes] |
| rs4899744 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4903847 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4903854 | 0.93[EUR][1000 genomes] |
| rs4903855 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs8019980 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931412 | chr14:79420297-79928269 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv902110 | chr14:79624492-79998294 | Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv530072 | chr14:79769657-79928269 | Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv902111 | chr14:79807197-79890677 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:79856800-79873800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
