Variant report

Variant	rs4899741
Chromosome Location	chr14:79848520-79848521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10144614	0.96[CEU][hapmap];0.86[GIH][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs10873321	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11159407	1.00[CEU][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs12437069	0.89[EUR][1000 genomes]
rs12894761	0.88[EUR][1000 genomes]
rs2167152	0.90[EUR][1000 genomes]
rs2196443	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2197989	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2197990	0.96[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2197992	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2197993	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2218783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2218784	0.81[EUR][1000 genomes]
rs2370975	0.86[EUR][1000 genomes]
rs2370980	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2574753	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2597088	0.96[CEU][hapmap];0.81[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2597090	0.96[CEU][hapmap];0.81[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2597093	0.91[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2887911	0.89[EUR][1000 genomes]
rs4243663	0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4899740	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4899744	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs4903847	1.00[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs4903848	0.87[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.86[YRI][hapmap]
rs4903854	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4903855	0.87[EUR][1000 genomes]
rs8019980	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79843400-79849800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr14:79845800-79848800	Weak transcription	Brain Germinal Matrix	brain
3	chr14:79846000-79849600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:79846000-79849800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:79846200-79849800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:79846400-79849600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:79846400-79850000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr14:79846400-79850800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:79847800-79848800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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