Variant report

Variant	rs12437225
Chromosome Location	chr14:65485815-65485816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65484853..65486970-chr14:65569008..65571041,2	MCF-7	breast:
2	chr14:65451988..65455429-chr14:65484852..65488330,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257365	Chromatin interaction
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11850984	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12434868	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17102391	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4902356	0.81[ASN][1000 genomes]
rs58539554	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58784215	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60038853	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7148144	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72625658	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72625659	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8012652	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8020734	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65454800-65513800	Weak transcription	Stomach Mucosa	stomach
2	chr14:65457600-65499800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:65459400-65508000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:65464400-65521200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:65467800-65494200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr14:65468200-65486800	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:65471000-65494000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:65471200-65486200	Strong transcription	Fetal Intestine Small	intestine
10	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:65471800-65486400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:65473400-65486400	Weak transcription	Fetal Kidney	kidney
13	chr14:65473400-65501400	Weak transcription	NHLF	lung
14	chr14:65473800-65513800	Weak transcription	HMEC	breast
15	chr14:65474000-65494200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:65474200-65494400	Weak transcription	NH-A	brain
17	chr14:65474400-65494800	Weak transcription	NHDF-Ad	bronchial
18	chr14:65474800-65486000	Strong transcription	Fetal Muscle Leg	muscle
19	chr14:65475200-65509400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:65475800-65501600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:65477200-65491800	Weak transcription	Psoas Muscle	Psoas
22	chr14:65477200-65493200	Weak transcription	Aorta	Aorta
23	chr14:65478200-65489000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr14:65478600-65491800	Weak transcription	NHEK	skin
25	chr14:65479000-65486200	Weak transcription	Fetal Heart	heart
26	chr14:65479400-65492400	Weak transcription	Colonic Mucosa	Colon
27	chr14:65479800-65493800	Weak transcription	HSMM	muscle
28	chr14:65480000-65507400	Weak transcription	Gastric	stomach
29	chr14:65480200-65486400	Weak transcription	K562	blood
30	chr14:65480200-65493000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:65480200-65499000	Weak transcription	Fetal Brain Male	brain
32	chr14:65480800-65507400	Weak transcription	Hela-S3	cervix
33	chr14:65481600-65493400	Weak transcription	Right Ventricle	heart
34	chr14:65482800-65494400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr14:65482800-65495800	Weak transcription	HUVEC	blood vessel
36	chr14:65483000-65493600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr14:65483000-65494000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:65483400-65486400	Weak transcription	HSMMtube	muscle
39	chr14:65483400-65493600	Weak transcription	Pancreas	Pancrea
40	chr14:65483400-65493800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr14:65483400-65528000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr14:65483600-65486400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:65483600-65486400	Weak transcription	Brain Angular Gyrus	brain
44	chr14:65483600-65486400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr14:65483600-65486400	Weak transcription	Fetal Lung	lung
46	chr14:65483600-65486400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr14:65483600-65486400	Weak transcription	A549	lung
48	chr14:65483600-65486600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:65483600-65486600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr14:65483600-65488200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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