Variant report

Variant	rs58784215
Chromosome Location	chr14:65477955-65477956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65475906..65478338-chr14:65479866..65482495,2	MCF-7	breast:
2	chr14:65472664..65474912-chr14:65475776..65478401,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264620	Chromatin interaction
ENSG00000257365	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11850984	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12434868	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12437225	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17102391	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58539554	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60038853	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7148144	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72625658	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72625659	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8012652	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8020734	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65454800-65478200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:65454800-65478400	Weak transcription	Brain Anterior Caudate	brain
3	chr14:65454800-65482800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:65454800-65513800	Weak transcription	Stomach Mucosa	stomach
5	chr14:65455200-65479000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:65455600-65478400	Weak transcription	Brain Germinal Matrix	brain
7	chr14:65457600-65478400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:65457600-65479200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr14:65457600-65479200	Weak transcription	Right Ventricle	heart
10	chr14:65457600-65499800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr14:65458000-65478400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr14:65459400-65508000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr14:65461000-65478600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:65463200-65478200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr14:65464400-65478400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:65464400-65521200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:65464600-65478000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr14:65464600-65478800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:65465200-65478200	Weak transcription	Brain Substantia Nigra	brain
20	chr14:65465600-65478800	Weak transcription	Hela-S3	cervix
21	chr14:65467800-65494200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr14:65468000-65478600	Weak transcription	Colonic Mucosa	Colon
23	chr14:65468200-65486800	Weak transcription	Colon Smooth Muscle	Colon
24	chr14:65468400-65478600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr14:65469800-65481000	Weak transcription	Fetal Lung	lung
26	chr14:65469800-65482200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr14:65469800-65482800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:65470000-65478200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr14:65470600-65479200	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr14:65470800-65478600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:65470800-65478600	Weak transcription	Fetal Heart	heart
33	chr14:65470800-65479000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr14:65470800-65484000	Strong transcription	HepG2	liver
35	chr14:65470800-65485400	Strong transcription	Fetal Stomach	stomach
36	chr14:65471000-65494000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr14:65471200-65486200	Strong transcription	Fetal Intestine Small	intestine
38	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr14:65471400-65478600	Weak transcription	Fetal Brain Male	brain
40	chr14:65471400-65479000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr14:65471800-65478200	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:65471800-65486400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr14:65472400-65480200	Strong transcription	Fetal Thymus	thymus
44	chr14:65472400-65485000	Strong transcription	Fetal Intestine Large	intestine
45	chr14:65472800-65478600	Weak transcription	Thymus	Thymus
46	chr14:65472800-65480000	Weak transcription	Pancreas	Pancrea
47	chr14:65472800-65484400	Strong transcription	Primary T cells from cord blood	blood
48	chr14:65473200-65478400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:65473400-65478200	Weak transcription	NHEK	skin
50	chr14:65473400-65478600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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