Variant report

Variant	rs12438058
Chromosome Location	chr15:39819219-39819220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10152903	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10152951	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1038097	1.00[ASN][1000 genomes]
rs1051442	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10520141	1.00[CHB][hapmap]
rs10520143	1.00[CHB][hapmap]
rs10520146	1.00[CHB][hapmap]
rs10520147	1.00[CHB][hapmap]
rs10520148	1.00[CHB][hapmap]
rs1073675	1.00[CHB][hapmap]
rs12442155	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12442221	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1382443	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1382444	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16969143	1.00[ASN][1000 genomes]
rs16969167	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969487	1.00[CHB][hapmap]
rs16969491	1.00[CHB][hapmap]
rs16969547	1.00[CHB][hapmap]
rs16969663	1.00[CHB][hapmap]
rs16969664	1.00[CHB][hapmap]
rs16969666	1.00[CHB][hapmap]
rs16969672	1.00[CHB][hapmap]
rs16969679	1.00[CHB][hapmap]
rs16969680	1.00[CHB][hapmap]
rs16969688	1.00[CHB][hapmap]
rs17631807	1.00[ASN][1000 genomes]
rs17633107	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17633210	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17702987	1.00[ASN][1000 genomes]
rs17705806	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17706083	1.00[CHB][hapmap]
rs17706179	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1813493	1.00[ASN][1000 genomes]
rs1994380	1.00[CHB][hapmap]
rs2129457	1.00[CHB][hapmap]
rs2228262	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2228263	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2411316	1.00[CHB][hapmap]
rs2618156	1.00[ASN][1000 genomes]
rs2618161	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2618166	1.00[ASN][1000 genomes]
rs2618167	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2664123	1.00[ASN][1000 genomes]
rs2664137	1.00[ASN][1000 genomes]
rs2664138	1.00[CHB][hapmap]
rs28622135	1.00[ASN][1000 genomes]
rs35275624	1.00[ASN][1000 genomes]
rs41315060	1.00[ASN][1000 genomes]
rs4415979	1.00[CHB][hapmap]
rs4503768	1.00[CHB][hapmap]
rs4923835	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs58188999	1.00[ASN][1000 genomes]
rs62002368	1.00[ASN][1000 genomes]
rs62002377	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62002378	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62002379	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62002380	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62002384	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492905	1.00[CHB][hapmap]
rs7172155	1.00[CHB][hapmap]
rs7173948	1.00[CHB][hapmap]
rs7179604	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7181354	1.00[CHB][hapmap]
rs7182423	1.00[CHB][hapmap]
rs74008526	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74008647	1.00[ASN][1000 genomes]
rs8041266	1.00[CHB][hapmap]
rs880270	1.00[CHB][hapmap]
rs937961	1.00[CHB][hapmap]
rs937962	1.00[CHB][hapmap]
rs9972350	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39818600-39819600	Weak transcription	Spleen	Spleen

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