Variant report

Variant	rs12441328
Chromosome Location	chr15:58804959-58804960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58800669..58805424-chr15:58807712..58810883,4	K562	blood:
2	chr15:58797035..58800948-chr15:58803702..58808140,4	K562	blood:
3	chr15:58797460..58800451-chr15:58803881..58805523,2	K562	blood:
4	chr15:58801519..58805506-chr15:58811166..58813986,3	K562	blood:

Variant related genes	Relation type
ENSG00000259476	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12324517	0.95[GIH][hapmap];0.80[LWK][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12592017	0.82[JPT][hapmap]
rs1979177	0.82[JPT][hapmap]
rs34101191	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4774302	0.83[ASW][hapmap];0.86[JPT][hapmap];0.95[LWK][hapmap];0.87[MKK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58791400-58809400	Weak transcription	Spleen	Spleen
2	chr15:58798600-58807800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:58798600-58813200	Weak transcription	Aorta	Aorta
4	chr15:58798800-58807800	Weak transcription	Primary B cells from cord blood	blood
5	chr15:58798800-58812600	Weak transcription	Left Ventricle	heart
6	chr15:58799000-58805000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:58799000-58806000	Weak transcription	Psoas Muscle	Psoas
8	chr15:58799200-58807200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:58799200-58809400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:58799400-58805000	Weak transcription	Fetal Thymus	thymus
11	chr15:58799400-58807800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:58801000-58806600	Enhancers	HSMMtube	muscle
13	chr15:58802400-58805000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:58802600-58805200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:58802800-58806400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:58803200-58805000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr15:58803400-58805600	Weak transcription	A549	lung
18	chr15:58803600-58805600	Weak transcription	NHDF-Ad	bronchial
19	chr15:58803600-58805800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:58803600-58807000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:58803600-58811800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:58803800-58805200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:58803800-58805400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:58803800-58805600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:58803800-58805600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:58803800-58805800	Weak transcription	NHEK	skin
27	chr15:58803800-58807800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:58803800-58812600	Weak transcription	Esophagus	oesophagus
29	chr15:58804000-58805000	Weak transcription	HSMM	muscle
30	chr15:58804000-58816200	Weak transcription	Liver	Liver
31	chr15:58804200-58807800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr15:58804600-58805000	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr15:58804600-58805000	Enhancers	Placenta	Placenta
34	chr15:58804600-58806200	Enhancers	Fetal Muscle Trunk	muscle
35	chr15:58804800-58806200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links