Variant report

Variant	rs12442428
Chromosome Location	chr15:34061776-34061777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10519873	0.91[ASN][1000 genomes]
rs10519874	0.91[ASN][1000 genomes]
rs10519875	0.91[ASN][1000 genomes]
rs11072659	0.91[ASN][1000 genomes]
rs11631718	0.83[ASN][1000 genomes]
rs11852447	0.88[ASN][1000 genomes]
rs11857110	0.83[ASN][1000 genomes]
rs12439461	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1429752	0.91[ASN][1000 genomes]
rs1429753	0.91[ASN][1000 genomes]
rs1594252	0.83[ASN][1000 genomes]
rs1594253	0.83[ASN][1000 genomes]
rs1864337	0.91[ASN][1000 genomes]
rs2082075	0.83[ASN][1000 genomes]
rs4145827	0.83[ASN][1000 genomes]
rs735612	0.91[ASN][1000 genomes]
rs8028269	0.97[ASN][1000 genomes]
rs8038562	0.91[ASN][1000 genomes]
rs8042318	0.88[ASN][1000 genomes]
rs8042469	0.88[ASN][1000 genomes]
rs8042964	0.88[ASN][1000 genomes]
rs965471	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34050400-34074200	Weak transcription	Brain Substantia Nigra	brain
2	chr15:34050800-34063800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:34050800-34072400	Weak transcription	Brain Anterior Caudate	brain
4	chr15:34050800-34080200	Weak transcription	Aorta	Aorta
5	chr15:34051000-34072600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:34051000-34089200	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:34051200-34063800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:34051200-34077400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:34051600-34072600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:34061200-34062000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:34061600-34121000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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