Variant report

Variant	rs8038562
Chromosome Location	chr15:34075080-34075081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10519873	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519875	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072659	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631718	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11852447	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857110	0.91[ASN][1000 genomes]
rs12438127	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[ASN][1000 genomes]
rs12442428	0.91[ASN][1000 genomes]
rs12901888	0.80[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.83[EUR][1000 genomes]
rs12908009	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1429752	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1429753	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594252	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1594253	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1864335	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[ASN][1000 genomes]
rs1864337	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2082075	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2163141	0.81[CEU][hapmap];0.85[CHD][hapmap];0.82[ASN][1000 genomes]
rs2288609	1.00[CHD][hapmap]
rs34424248	0.85[ASN][1000 genomes]
rs35477217	0.85[ASN][1000 genomes]
rs4145827	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes]
rs4779649	0.85[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs735612	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7402430	0.86[ASN][1000 genomes]
rs8028269	0.94[ASN][1000 genomes]
rs8037952	0.82[ASN][1000 genomes]
rs8042318	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8042469	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8042964	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs965471	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34050800-34080200	Weak transcription	Aorta	Aorta
2	chr15:34051000-34089200	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:34051200-34077400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:34061600-34121000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:34067800-34086800	Weak transcription	Fetal Stomach	stomach
6	chr15:34071000-34075200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:34071400-34107200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:34071600-34076000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:34071600-34076400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:34072800-34077800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:34073000-34077400	Weak transcription	Brain Anterior Caudate	brain
12	chr15:34073200-34080000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:34073800-34086800	Weak transcription	Brain Angular Gyrus	brain
14	chr15:34073800-34102800	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:34074400-34077800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:34074400-34081600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:34074800-34075800	Enhancers	Fetal Brain Male	brain
18	chr15:34075000-34075600	Enhancers	Fetal Brain Female	brain
19	chr15:34075000-34076600	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links