Variant report

Variant	rs12442689
Chromosome Location	chr15:35319589-35319590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1471200	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6495738	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6495739	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6495742	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7402595	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7494870	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8029574	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9920674	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35306200-35320200	Weak transcription	HSMMtube	muscle
2	chr15:35312400-35335000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:35316400-35320600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:35317000-35323200	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links