Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35313065..35315808-chr15:35319182..35321746,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11073078	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12324696	0.85[AFR][1000 genomes]
rs12442689	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1471200	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62005094	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6495738	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6495740	0.91[AFR][1000 genomes]
rs6495742	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7179161	0.84[AFR][1000 genomes]
rs7180579	0.85[AFR][1000 genomes]
rs7182812	0.91[AFR][1000 genomes]
rs7183352	0.91[AFR][1000 genomes]
rs72704777	0.85[AFR][1000 genomes]
rs7402595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7494870	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8029574	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9806356	0.91[AFR][1000 genomes]
rs9806378	0.85[AFR][1000 genomes]
rs9806707	0.85[AFR][1000 genomes]
rs9920674	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6495739	GREM1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35312400-35335000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:35317000-35323200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:35320600-35321200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search: