Variant report

Variant	rs1244565
Chromosome Location	chr3:177635209-177635210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1833405	0.80[ASN][1000 genomes]
rs6443513	0.80[ASN][1000 genomes]
rs6443514	0.80[ASN][1000 genomes]
rs6443516	0.80[ASN][1000 genomes]
rs6782448	0.81[ASN][1000 genomes]
rs7643155	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177634200-177635400	Enhancers	HMEC	breast
3	chr3:177635000-177635600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:177635000-177635800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:177635200-177635800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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