Variant report

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1244565	0.80[ASN][1000 genomes]
rs1362826	0.86[EUR][1000 genomes]
rs1421165	0.81[EUR][1000 genomes]
rs4453861	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4478092	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6443513	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6443514	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6443516	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782448	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6784158	0.82[EUR][1000 genomes]
rs6786110	0.83[CHD][hapmap]
rs6801902	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7643155	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177581400-177622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177617800-177628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:177618000-177622000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:177618000-177622000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:177618000-177622200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:177618000-177622200	Weak transcription	Pancreas	Pancrea
7	chr3:177618400-177621600	Weak transcription	Osteobl	bone
8	chr3:177618400-177622000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:177618600-177621400	Weak transcription	Liver	Liver
10	chr3:177620000-177621600	Enhancers	Brain Germinal Matrix	brain
11	chr3:177620200-177624400	Enhancers	Fetal Brain Female	brain
12	chr3:177620600-177625200	Enhancers	NHLF	lung
13	chr3:177621000-177621400	Enhancers	HSMMtube	muscle
14	chr3:177621200-177621400	Enhancers	Colon Smooth Muscle	Colon
15	chr3:177621200-177621400	Enhancers	Rectal Smooth Muscle	rectum
16	chr3:177621200-177622000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:177621200-177622000	Weak transcription	Aorta	Aorta
18	chr3:177621200-177622800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:177621200-177623400	Enhancers	HSMM	muscle
20	chr3:177621200-177623800	Enhancers	Fetal Brain Male	brain
21	chr3:177621200-177625000	Enhancers	Fetal Kidney	kidney

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