Variant report

Variant	rs12452293
Chromosome Location	chr17:15493441-15493442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73289577	1.00[ASN][1000 genomes]
rs73978063	1.00[ASN][1000 genomes]
rs8076239	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1058286	chr17:15315763-15561130	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv543213	chr17:15315763-15561130	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv960419	chr17:15470653-15494148	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv1067123	chr17:15482503-15557728	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15491600-15501800	Weak transcription	Esophagus	oesophagus
2	chr17:15492200-15494200	Weak transcription	Fetal Thymus	thymus
3	chr17:15492200-15495400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:15492200-15497000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr17:15492200-15497000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr17:15492400-15493600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr17:15492400-15493600	Enhancers	HUVEC	blood vessel
8	chr17:15492400-15493800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr17:15492400-15494800	Enhancers	Dnd41	blood
10	chr17:15492400-15495600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr17:15492800-15493800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr17:15492800-15494000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:15492800-15496400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr17:15493000-15495000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr17:15493000-15501000	Weak transcription	A549	lung
16	chr17:15493200-15493600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr17:15493200-15493600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr17:15493200-15493600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr17:15493200-15493600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr17:15493200-15494600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr17:15493200-15495000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr17:15493400-15493600	Enhancers	Primary T cells from cord blood	blood
23	chr17:15493400-15493800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr17:15493400-15494800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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