Variant report

Variant	rs12454769
Chromosome Location	chr18:25674631-25674632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25658211..25660903-chr18:25672408..25674979,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10853682	1.00[ASN][1000 genomes]
rs11083249	1.00[ASN][1000 genomes]
rs11083250	1.00[ASN][1000 genomes]
rs11564310	0.90[ASN][1000 genomes]
rs11564336	0.90[ASN][1000 genomes]
rs11564381	0.90[ASN][1000 genomes]
rs11872284	1.00[ASN][1000 genomes]
rs11874384	0.90[ASN][1000 genomes]
rs12185349	1.00[ASN][1000 genomes]
rs12453985	0.90[ASN][1000 genomes]
rs12454164	1.00[ASN][1000 genomes]
rs12457737	1.00[ASN][1000 genomes]
rs12457781	1.00[ASN][1000 genomes]
rs12458418	0.87[AFR][1000 genomes]
rs12458840	0.90[ASN][1000 genomes]
rs12458872	0.90[ASN][1000 genomes]
rs12953509	1.00[ASN][1000 genomes]
rs12969129	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443449	1.00[ASN][1000 genomes]
rs17446505	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446547	1.00[ASN][1000 genomes]
rs17468924	0.83[ASN][1000 genomes]
rs17468987	1.00[ASN][1000 genomes]
rs17469001	1.00[ASN][1000 genomes]
rs1860642	0.90[ASN][1000 genomes]
rs2067772	1.00[ASN][1000 genomes]
rs4800842	1.00[ASN][1000 genomes]
rs8089347	1.00[ASN][1000 genomes]
rs8095341	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25668000-25680200	Weak transcription	HSMM	muscle
3	chr18:25668200-25688000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr18:25669000-25674800	Weak transcription	NH-A	brain
5	chr18:25669800-25676000	Weak transcription	Fetal Brain Female	brain
6	chr18:25670000-25675000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr18:25670000-25677000	Weak transcription	Fetal Brain Male	brain
8	chr18:25670400-25687800	Weak transcription	Brain Germinal Matrix	brain
9	chr18:25670600-25690000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:25671800-25674800	Weak transcription	Osteobl	bone
11	chr18:25671800-25675600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr18:25671800-25677000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:25672000-25675000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr18:25672000-25688000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr18:25672200-25680000	Weak transcription	Left Ventricle	heart
16	chr18:25672200-25680200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr18:25672400-25675000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr18:25672400-25677000	Weak transcription	Fetal Heart	heart
19	chr18:25673000-25688400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr18:25673400-25678600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr18:25673600-25687400	Weak transcription	HepG2	liver
22	chr18:25673800-25677600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:25674000-25676000	Weak transcription	A549	lung
24	chr18:25674200-25676000	Weak transcription	Liver	Liver
25	chr18:25674200-25679800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr18:25674400-25678400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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