Variant report

Variant	rs4800842
Chromosome Location	chr18:25696210-25696211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10853682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083249	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083250	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11083252	1.00[JPT][hapmap]
rs11564299	1.00[JPT][hapmap]
rs11564310	1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11564336	1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11564341	1.00[JPT][hapmap]
rs11564381	1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11872284	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11874384	1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11874478	1.00[JPT][hapmap]
rs12185349	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453985	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12454164	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12454769	1.00[ASN][1000 genomes]
rs12457737	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12457781	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12458418	1.00[JPT][hapmap]
rs12458840	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12458872	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12953509	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12956036	1.00[JPT][hapmap]
rs12959867	1.00[JPT][hapmap]
rs12960181	1.00[JPT][hapmap]
rs12969129	1.00[ASN][1000 genomes]
rs1443449	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446505	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17446547	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446875	1.00[JPT][hapmap]
rs17468924	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17468987	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469001	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17469371	1.00[JPT][hapmap]
rs17536472	1.00[JPT][hapmap]
rs1860642	1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1944288	1.00[JPT][hapmap]
rs2067772	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191636	1.00[JPT][hapmap]
rs4800289	1.00[JPT][hapmap]
rs6508526	1.00[JPT][hapmap]
rs719723	1.00[JPT][hapmap]
rs8089347	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8091862	1.00[JPT][hapmap]
rs8095341	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25687200-25699800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr18:25687400-25696800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr18:25691000-25696600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:25691400-25696800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:25691400-25703400	Weak transcription	Fetal Brain Male	brain
6	chr18:25692200-25703200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr18:25692400-25696600	Enhancers	HUVEC	blood vessel
8	chr18:25692800-25696800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr18:25692800-25699600	Weak transcription	Brain Substantia Nigra	brain
10	chr18:25692800-25700600	Enhancers	Fetal Heart	heart
11	chr18:25692800-25703600	Weak transcription	Ovary	ovary
12	chr18:25693000-25697400	Weak transcription	Brain Germinal Matrix	brain
13	chr18:25693000-25699200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr18:25693200-25703600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr18:25694000-25696800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr18:25694200-25696400	Enhancers	NHLF	lung
17	chr18:25694800-25697400	Enhancers	HepG2	liver
18	chr18:25694800-25697600	Enhancers	Liver	Liver
19	chr18:25695000-25696400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr18:25695000-25696400	Flanking Active TSS	A549	lung
21	chr18:25695000-25697000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr18:25695400-25696800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr18:25695400-25699000	Weak transcription	Brain Anterior Caudate	brain
24	chr18:25695400-25699200	Weak transcription	Right Ventricle	heart
25	chr18:25695400-25708400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr18:25695600-25696800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr18:25695600-25696800	Enhancers	HSMM	muscle
28	chr18:25695600-25697000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr18:25695600-25697000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr18:25695600-25699000	Weak transcription	Right Atrium	heart
31	chr18:25695600-25699200	Weak transcription	Brain Angular Gyrus	brain
32	chr18:25695600-25699600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr18:25695600-25699600	Weak transcription	Left Ventricle	heart
34	chr18:25695600-25699800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr18:25695600-25701600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr18:25695600-25703600	Weak transcription	Aorta	Aorta
37	chr18:25695600-25706800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr18:25695800-25696600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr18:25695800-25697400	Enhancers	Osteobl	bone
40	chr18:25696000-25696400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr18:25696000-25696600	Genic enhancers	NH-A	brain
42	chr18:25696000-25697000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr18:25696000-25701200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr18:25696000-25701200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr18:25696200-25699000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr18:25696200-25701600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr18:25696200-25727800	Weak transcription	HSMMtube	muscle

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