Variant report
| Variant | rs11564341 |
|---|---|
| Chromosome Location | chr18:25772566-25772567 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:25772165..25772838-chr20:46130188..46130946,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000124151 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10853682 | 1.00[JPT][hapmap] |
| rs11083249 | 1.00[JPT][hapmap] |
| rs11083250 | 1.00[JPT][hapmap] |
| rs11083252 | 1.00[JPT][hapmap] |
| rs11083258 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11564299 | 1.00[JPT][hapmap] |
| rs11564310 | 1.00[JPT][hapmap] |
| rs11564336 | 1.00[JPT][hapmap] |
| rs11564381 | 1.00[JPT][hapmap] |
| rs11872284 | 1.00[JPT][hapmap] |
| rs11874384 | 1.00[JPT][hapmap] |
| rs11874478 | 1.00[JPT][hapmap] |
| rs12185349 | 1.00[JPT][hapmap] |
| rs12454164 | 1.00[JPT][hapmap] |
| rs12457737 | 1.00[JPT][hapmap] |
| rs12457781 | 1.00[JPT][hapmap] |
| rs12458418 | 1.00[JPT][hapmap] |
| rs12953509 | 1.00[JPT][hapmap] |
| rs12956036 | 1.00[JPT][hapmap] |
| rs12959867 | 1.00[JPT][hapmap] |
| rs12960181 | 1.00[JPT][hapmap] |
| rs12965878 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1443449 | 1.00[JPT][hapmap] |
| rs17446505 | 1.00[JPT][hapmap] |
| rs17446547 | 1.00[JPT][hapmap] |
| rs17446875 | 1.00[JPT][hapmap] |
| rs17468924 | 1.00[JPT][hapmap] |
| rs17469001 | 1.00[JPT][hapmap] |
| rs17469371 | 1.00[JPT][hapmap] |
| rs17536472 | 1.00[JPT][hapmap] |
| rs1860642 | 1.00[JPT][hapmap] |
| rs1944288 | 1.00[JPT][hapmap] |
| rs2067772 | 1.00[JPT][hapmap] |
| rs2191636 | 1.00[JPT][hapmap] |
| rs4800289 | 1.00[JPT][hapmap] |
| rs4800842 | 1.00[JPT][hapmap] |
| rs6508526 | 1.00[JPT][hapmap] |
| rs719723 | 1.00[JPT][hapmap] |
| rs7244506 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72888107 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8089347 | 1.00[JPT][hapmap] |
| rs8091862 | 1.00[JPT][hapmap] |
| rs8095341 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761996 | chr18:24866083-25818618 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv9622 | chr18:25749905-26032816 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:25759200-25778000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr18:25768400-25773200 | Weak transcription | HepG2 | liver |
