Variant report

Variant	rs8091862
Chromosome Location	chr18:25745057-25745058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25740858..25743576-chr18:25744029..25745634,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10853682	1.00[JPT][hapmap]
rs11083249	1.00[JPT][hapmap]
rs11083250	1.00[JPT][hapmap]
rs11083252	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564299	0.90[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564310	1.00[JPT][hapmap]
rs11564336	1.00[JPT][hapmap]
rs11564341	1.00[JPT][hapmap]
rs11564381	1.00[JPT][hapmap]
rs11661487	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11872284	1.00[JPT][hapmap]
rs11874384	1.00[JPT][hapmap]
rs11874478	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185349	1.00[JPT][hapmap]
rs12454164	1.00[JPT][hapmap]
rs12457737	1.00[JPT][hapmap]
rs12457781	1.00[JPT][hapmap]
rs12458418	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12953509	1.00[JPT][hapmap]
rs12956036	1.00[JPT][hapmap]
rs12959867	1.00[JPT][hapmap]
rs12960181	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443449	1.00[JPT][hapmap]
rs17446505	1.00[JPT][hapmap]
rs17446547	1.00[JPT][hapmap]
rs17446875	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468924	1.00[JPT][hapmap]
rs17469001	1.00[JPT][hapmap]
rs17469371	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17536472	1.00[JPT][hapmap]
rs1860642	1.00[JPT][hapmap]
rs1944288	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067772	1.00[JPT][hapmap]
rs2191636	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4800289	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4800842	1.00[JPT][hapmap]
rs6508526	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719723	1.00[JPT][hapmap]
rs7243759	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8089347	1.00[JPT][hapmap]
rs8095341	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25717600-25753400	Weak transcription	Dnd41	blood
2	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
4	chr18:25734600-25748200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:25734800-25749200	Weak transcription	Fetal Kidney	kidney
6	chr18:25736800-25747400	Enhancers	Liver	Liver
7	chr18:25738800-25754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr18:25739200-25747200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr18:25739400-25751800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr18:25741000-25746800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr18:25741200-25753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr18:25742400-25747200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr18:25742400-25751800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:25742600-25751800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr18:25742600-25754200	Weak transcription	Brain Angular Gyrus	brain
16	chr18:25742800-25746200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr18:25742800-25746600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr18:25742800-25747200	Enhancers	Fetal Heart	heart
19	chr18:25742800-25749800	Weak transcription	Right Ventricle	heart
20	chr18:25742800-25755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr18:25743000-25751600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr18:25743200-25745200	Enhancers	Brain Germinal Matrix	brain
23	chr18:25743200-25745200	Enhancers	Fetal Brain Female	brain
24	chr18:25743400-25745200	Weak transcription	Ovary	ovary
25	chr18:25743400-25747200	Weak transcription	Fetal Intestine Large	intestine
26	chr18:25743400-25747200	Weak transcription	Fetal Intestine Small	intestine
27	chr18:25743400-25747600	Weak transcription	Brain Anterior Caudate	brain
28	chr18:25743400-25747800	Weak transcription	A549	lung
29	chr18:25743400-25753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr18:25743600-25747600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr18:25743600-25747800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr18:25743600-25747800	Weak transcription	Right Atrium	heart
33	chr18:25743600-25750400	Weak transcription	Left Ventricle	heart
34	chr18:25743800-25747200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr18:25743800-25747400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr18:25743800-25747800	Weak transcription	Osteobl	bone
37	chr18:25744400-25745800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr18:25744600-25747600	Enhancers	HepG2	liver
39	chr18:25744800-25748000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr18:25744800-25749000	Strong transcription	NH-A	brain
41	chr18:25744800-25754200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr18:25745000-25745600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr18:25745000-25753800	Weak transcription	HSMM	muscle

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