Variant report

Variant	rs6508526
Chromosome Location	chr18:25727450-25727451
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25725957..25728565-chr18:25735891..25737665,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10853682	1.00[JPT][hapmap]
rs11083249	1.00[JPT][hapmap]
rs11083250	1.00[JPT][hapmap]
rs11083252	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564299	0.90[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564310	1.00[JPT][hapmap]
rs11564336	1.00[JPT][hapmap]
rs11564341	1.00[JPT][hapmap]
rs11564381	1.00[JPT][hapmap]
rs11661487	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11872284	1.00[JPT][hapmap]
rs11874384	1.00[JPT][hapmap]
rs11874478	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185349	1.00[JPT][hapmap]
rs12454164	1.00[JPT][hapmap]
rs12457737	1.00[JPT][hapmap]
rs12457781	1.00[JPT][hapmap]
rs12458418	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12953509	1.00[JPT][hapmap]
rs12956036	1.00[JPT][hapmap]
rs12959867	1.00[JPT][hapmap]
rs12960181	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443449	1.00[JPT][hapmap]
rs17446505	1.00[JPT][hapmap]
rs17446547	1.00[JPT][hapmap]
rs17446875	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468924	1.00[JPT][hapmap]
rs17469001	1.00[JPT][hapmap]
rs17469371	0.95[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17495279	0.85[YRI][hapmap]
rs17536472	1.00[JPT][hapmap]
rs17536968	0.85[YRI][hapmap]
rs1860642	1.00[JPT][hapmap]
rs1944288	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067772	1.00[JPT][hapmap]
rs2191636	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4800289	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4800842	1.00[JPT][hapmap]
rs6508527	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs6508528	0.89[LWK][hapmap];0.86[MKK][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs719723	1.00[JPT][hapmap]
rs7243759	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8089347	1.00[JPT][hapmap]
rs8091862	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095341	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25696200-25727800	Weak transcription	HSMMtube	muscle
2	chr18:25703800-25727600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr18:25703800-25730000	Weak transcription	Aorta	Aorta
4	chr18:25705000-25727800	Weak transcription	Ovary	ovary
5	chr18:25709400-25727600	Weak transcription	A549	lung
6	chr18:25710200-25727600	Weak transcription	HepG2	liver
7	chr18:25710400-25727600	Weak transcription	Brain Anterior Caudate	brain
8	chr18:25710400-25727600	Weak transcription	Brain Substantia Nigra	brain
9	chr18:25710600-25731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr18:25712600-25728400	Weak transcription	Right Ventricle	heart
11	chr18:25712600-25730000	Weak transcription	Left Ventricle	heart
12	chr18:25712800-25728400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:25714800-25727600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr18:25716800-25730400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr18:25717600-25727600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr18:25717600-25753400	Weak transcription	Dnd41	blood
17	chr18:25720800-25730000	Weak transcription	Fetal Kidney	kidney
18	chr18:25721400-25730000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr18:25722200-25727600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:25724000-25732400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr18:25724000-25732800	Weak transcription	Gastric	stomach
22	chr18:25724200-25727800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr18:25725000-25729800	Enhancers	Fetal Heart	heart
24	chr18:25725000-25731600	Enhancers	Liver	Liver
25	chr18:25725600-25727600	Weak transcription	NH-A	brain
26	chr18:25725600-25731000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr18:25726000-25739200	Weak transcription	HSMM	muscle
28	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr18:25726400-25728200	Enhancers	Fetal Brain Male	brain
30	chr18:25726600-25729200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr18:25726800-25727600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr18:25726800-25727600	Weak transcription	Fetal Brain Female	brain
33	chr18:25726800-25731000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr18:25727000-25727600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr18:25727000-25727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr18:25727000-25729200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr18:25727000-25730000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr18:25727000-25731000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr18:25727200-25728800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr18:25727200-25728800	Enhancers	Osteobl	bone
41	chr18:25727200-25731000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr18:25727400-25727600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr18:25727400-25727600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr18:25727400-25727600	Enhancers	Brain Cingulate Gyrus	brain
45	chr18:25727400-25727600	Enhancers	Brain Hippocampus Middle	brain
46	chr18:25727400-25727800	Enhancers	Brain Germinal Matrix	brain
47	chr18:25727400-25728000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr18:25727400-25728000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr18:25727400-25728000	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr18:25727400-25728200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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